BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42564 =	359 (1.200)	17 (0.080) +TACATTATAAAATACATATC	10/120	NT	6.8%	coding (1402/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	= 2479065	269 (0.900)	17 (0.080) +TACATTATAAAATACATATC	10/120	NT	6.8%	intergenic (+21/+119)	USA300HOU_RS12765/hrtA_2	hypothetical protein/Putative hemin import ATP‑binding protein HrtA

Only 100 of 325 total aligned reads displayed.

CAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTAAAT  >  USA300TCH1516_ALE/2478975‑2479155

cAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCtttttt                                                                                            >  1:111970/1‑91 (MQ=255)

cAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCtttttt                                                                                            >  1:376172/1‑91 (MQ=255)

aaaGCTATATGCATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCtttttt                                                                                            <  2:5840983/90‑1 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          >  1:1160034/1‑91 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          >  2:3823544/1‑91 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          >  2:3329287/1‑91 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          >  1:3584943/1‑91 (MQ=255)

  aGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTAc                                                                                          >  1:2510207/1‑91 (MQ=255)

   gCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACa                                                                                         <  1:311838/91‑1 (MQ=255)

       tatGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGc                                                                                     >  2:342118/1‑91 (MQ=39)

         tGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt                                                                                   <  2:1235283/91‑1 (MQ=37)

         tGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCt                                                                                   >  1:5556440/1‑91 (MQ=37)

          gAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTa                                                                                  <  1:4438056/91‑1 (MQ=35)

           aaTGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTaa                                                                                 <  2:1552149/91‑1 (MQ=34)

              gCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGaa                                                                              <  1:1936017/91‑1 (MQ=31)

              gCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGaa                                                                              <  2:2751788/91‑1 (MQ=31)

              gCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAAACAGCTTTTTTACATTGCCTAAGaa                                                                              >  2:5085426/1‑91 (MQ=14)

                           cATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAg                                                                 >  2:2963499/1‑91 (MQ=31)

                            aTTATAAGATACATATCAAAAAAGCTGATTTCTATCAAATAAGTAATAGAAATCAGCTTTGTTGCATTGCCTAAGAAGTTAATGTCCCAGc                                                                <  1:4657268/91‑1 (MQ=11)

                            aTTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  1:188343/91‑1 (MQ=32)

                            aTTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGc                                                                <  1:5189474/91‑1 (MQ=32)

                             ttATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGcc                                                               >  1:4008241/1‑91 (MQ=33)

                             ttATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGcc                                                               <  2:376172/91‑1 (MQ=33)

                              tataAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTCACATTGCCTAAGAACTTAATGTCCCAGCCt                                                              >  1:4521342/1‑91 (MQ=18)

                               ataAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTg                                                             >  1:414963/1‑91 (MQ=35)

                               ataAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTg                                                             <  1:5783043/91‑1 (MQ=35)

                                 aaaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGtt                                                           >  2:5595690/1‑91 (MQ=38)

                                  aaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGttt                                                          >  2:4694489/1‑91 (MQ=39)

                                  aaaTACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGttt                                                          >  1:2386512/1‑91 (MQ=39)

                                     tACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGtttttt                                                       >  1:1481942/1‑91 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCTTGTTTTTTGt                                                     >  2:2169012/1‑91 (MQ=255)

                                       cATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGt                                                     >  1:4203776/1‑91 (MQ=255)

                                        atatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTa                                                    >  2:2322551/1‑91 (MQ=255)

                                        atatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTa                                                    <  2:1654952/91‑1 (MQ=255)

                                        atatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTa                                                    >  1:672364/1‑91 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaa                                                   <  1:5145965/91‑1 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaa                                                   <  1:2812520/91‑1 (MQ=255)

                                         tatCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTaa                                                   <  2:1773822/91‑1 (MQ=255)

                                          atCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctatttt                                                  <  2:3663933‑M2/91‑43 (MQ=255)

                                           tCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAAc                                                 >  1:1521522/1‑91 (MQ=255)

                                            cAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAAcc                                                <  2:2699325/91‑1 (MQ=255)

                                            cAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAAcc                                                <  1:739752/91‑1 (MQ=255)

                                               aaaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCaa                                             <  2:5380675/91‑1 (MQ=255)

                                                aaaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCaaa                                            <  1:3478792/91‑1 (MQ=255)

                                                 aaGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAAt                                           <  2:2568710/91‑1 (MQ=255)

                                                  aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatat                                          <  1:1560494‑M2/91‑51 (MQ=255)

                                                  aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTTAACCCAAATc                                          >  2:5741141/1‑91 (MQ=255)

                                                  aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATc                                          >  1:2666654/1‑91 (MQ=255)

                                                  aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATc                                          <  2:1739792/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         <  2:3235827/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         <  1:3303282/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         <  1:5530102/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         <  2:1481942/91‑1 (MQ=255)

                                                   gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCg                                         <  1:4732001/91‑1 (MQ=255)

                                                    cTGATTTCTATCAAATAATTAATAGAAATCAGCTATTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatatta                                        <  2:3486230‑M2/91‑53 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatattaat                                      <  2:3066913‑M2/91‑55 (MQ=255)

                                                      gATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAt                                      >  2:4516208/1‑91 (MQ=255)

                                                       aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAtt                                     >  2:4966956/1‑91 (MQ=255)

                                                       aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAtt                                     <  1:1351792/91‑1 (MQ=255)

                                                       aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTAtt                                     >  1:5244653/1‑91 (MQ=255)

                                                       aTTTCTATCAAATAAATAATAGAAATCAGCTTTTTTgatatgtattttataatgtacagctcgttgagctgctattttccttatattaagt                                     <  2:1616201‑M2/91‑56 (MQ=255)

                                                         ttCTATTAAATAATTAATCGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCt                                   <  1:4906381/91‑1 (MQ=255)

                                                         ttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCt                                   <  1:4927358/91‑1 (MQ=255)

                                                         ttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCt                                   <  2:4338596/91‑1 (MQ=255)

                                                         ttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCt                                   >  1:1407627/1‑91 (MQ=255)

                                                            tATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGtt                                <  1:5103885/91‑1 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              >  2:4166395/1‑91 (MQ=255)

                                                              tCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTAt                              <  1:3027624/91‑1 (MQ=255)

                                                              tCAAATAATCAATAGAAATCAGCGTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGttct                              >  2:1075590/1‑89 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             >  2:4261435/1‑91 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             <  2:1351185/91‑1 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             >  1:2106954/1‑91 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             <  1:1634758/91‑1 (MQ=255)

                                                               cAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATc                             >  2:3579976/1‑91 (MQ=255)

                                                                aaaTAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCt                            >  2:1574760/1‑91 (MQ=255)

                                                                    aattaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACt                        >  2:1171039/1‑91 (MQ=255)

                                                                     attaatAGAAATCAGCTTTTTTACATTTCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACtt                       >  2:4296863/1‑91 (MQ=255)

                                                                     attaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACtt                       >  1:2054437/1‑91 (MQ=255)

                                                                      ttaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACttt                      >  2:5512694/1‑91 (MQ=255)

                                                                       taatAGAAATCAGCTTTTTTATATTTTTTAAGAACTTAATGTCCCAGCCTGTTTTTTTTAAACCCAAATCGTATTCTGTTATCTAACtttt                     >  2:2408998/1‑91 (MQ=25)

                                                                       taatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACtttt                     >  2:1931159/1‑91 (MQ=255)

                                                                        aatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTta                    <  2:5271954/91‑1 (MQ=255)

                                                                         atAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCGCAGCCTGTTTTTTGTAAACCCAAGTCGTATTCTGTTATCTAACTTTtat                   >  2:5420756/1‑91 (MQ=255)

                                                                              aaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtactac              <  1:2263510/91‑1 (MQ=255)

                                                                              aaTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTAtactac              >  2:4786590/1‑91 (MQ=255)

                                                                               aTCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATactact             >  1:859337/1‑91 (MQ=255)

                                                                                tCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATActacta            <  2:3189067/91‑1 (MQ=255)

                                                                                tCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATActacta            <  1:505391/91‑1 (MQ=255)

                                                                                 cAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTAt           <  2:4379670/91‑1 (MQ=255)

                                                                                  aGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATg          >  1:5603066/1‑91 (MQ=255)

                                                                                   gCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGt         <  2:4882536/91‑1 (MQ=255)

                                                                                   gCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGt         >  2:4049255/1‑91 (MQ=255)

                                                                                    cTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTc        <  1:2763434/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  2:5131605/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  2:4616493/91‑1 (MQ=255)

                                                                                     ttttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCt       <  2:2056876/91‑1 (MQ=255)

                                                                                      tttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCtt      <  1:904561/91‑1 (MQ=255)

                                                                                      tttttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCtt      >  1:5311719/1‑91 (MQ=255)

                                                                                        tttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTaa    >  1:3862793/1‑91 (MQ=255)

                                                                                        tttACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACGTTTATACTACTATGTCTTaa    <  2:720312/91‑1 (MQ=255)

CAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAGCCTGTTTTTTGTAAACCCAAATCGTATTCTGTTATCTAACTTTTATACTACTATGTCTTAAAT  >  USA300TCH1516_ALE/2478975‑2479155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.