BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42564 =	359 (1.200)	17 (0.080) +TACATTATAAAATACATATC	10/120	NT	6.8%	coding (1402/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	= 2479065	269 (0.900)	17 (0.080) +TACATTATAAAATACATATC	10/120	NT	6.8%	intergenic (+21/+119)	USA300HOU_RS12765/hrtA_2	hypothetical protein/Putative hemin import ATP‑binding protein HrtA

Only 100 of 407 total aligned reads displayed.

GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGACA  >  USA300TCH1516_ALE/42474‑42653

gggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTc                                                                                           <  2:163751/91‑1 (MQ=255)

 ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCa                                                                                          >  1:140148/1‑91 (MQ=255)

  gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                                                                                         <  2:2114473/91‑1 (MQ=255)

   aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                                                                                        <  2:2242916/91‑1 (MQ=255)

   aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                                                                                        >  1:1953748/1‑91 (MQ=255)

      tAAAGTTCTTGGATGAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTATTATAAATTTTTTGATTATATTCAGCTCg                                                                                     <  1:5382397/91‑1 (MQ=255)

      tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCg                                                                                     <  1:862702/91‑1 (MQ=255)

        aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGtt                                                                                   <  2:384482/91‑1 (MQ=255)

         aGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                                                                                  <  2:1720256/91‑1 (MQ=255)

         aGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                                                                                  >  1:1705027/1‑91 (MQ=255)

          gTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGa                                                                                 >  2:2615036/1‑91 (MQ=255)

          gTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGa                                                                                 >  1:4688885/1‑91 (MQ=255)

             cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct                                                                              <  2:3533460/91‑1 (MQ=255)

             cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct                                                                              <  2:3723719/91‑1 (MQ=255)

               tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                            <  1:954073/91‑1 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                           <  2:1282739/91‑1 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                           >  1:5862337/1‑91 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                           >  2:3230923/1‑91 (MQ=255)

                 gATAAGAGAAAAAAGACAAGTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta                                                                          <  1:1895953/91‑1 (MQ=255)

                  aTAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac                                                                         <  2:4528896/91‑1 (MQ=255)

                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAATGTCTTTTTTATAAATTTTTTGATTATTTTAAGCTCGTTGACCTactact                                                                        >  2:5698452/1‑91 (MQ=255)

                     atcaaaaaagctgatttctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTtgagctgctatttt                                                                      <  2:3663933‑M1/22‑5 (MQ=255)

                     aGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                                      <  1:705634/91‑1 (MQ=255)

                     aGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                                      <  1:224201/91‑1 (MQ=255)

                     aGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACttt                                                                      <  1:375654/91‑1 (MQ=255)

                      gTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtttt                                                                     >  2:284160/1‑91 (MQ=255)

                       tGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                                    >  1:4632853/1‑91 (MQ=255)

                        gAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                                   <  2:5811841/91‑1 (MQ=255)

                        gAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                                   <  2:5386069/91‑1 (MQ=255)

                         aaaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                                                  >  2:3967976/1‑91 (MQ=255)

                          aaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAACTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTta                                                                 <  1:5792136/91‑1 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                <  1:1334781/91‑1 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                <  2:5059839/91‑1 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                >  2:2903021/1‑91 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                >  1:2798159/1‑91 (MQ=255)

                             agctgatttctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTatat                                                              <  1:1560494‑M1/30‑1 (MQ=255)

                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTTTTTCTTTTCATCTCGTTGATCTACTACTTTTCTTTTAttt                                                            >  2:2521130/1‑90 (MQ=255)

                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                                            >  1:2985749/1‑91 (MQ=255)

                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                                            >  2:3397700/1‑91 (MQ=255)

                               ctgatttctatcaaataattaatagaaatcagctattttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTa                                                            <  2:3486064‑M1/32‑1 (MQ=255)

                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                           >  1:4559981/1‑91 (MQ=255)

                                 cAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaat                                                          >  1:5347552/1‑90 (MQ=255)

                                 cAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTCAg                                                          >  1:2923988/1‑91 (MQ=255)

                                 cAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAg                                                          <  2:1331423/91‑1 (MQ=255)

                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                         <  1:2132372/91‑1 (MQ=255)

                                     ttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGcc                                                      <  2:1562572/91‑1 (MQ=255)

                                      tCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCa                                                     <  2:1162222/91‑1 (MQ=255)

                                       tatcaaataattaatagaaatcagctttttttttttttattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                    <  2:4957136‑M1/40‑1 (MQ=255)

                                       catcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCCCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                    <  1:1119726‑M1/40‑1 (MQ=255)

                                       cTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAt                                                    <  1:4037813/91‑1 (MQ=255)

                                       atATTGAGATAATATAAAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAt                                                    <  2:5592562/90‑1 (MQ=255)

                                        tATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAtt                                                   <  1:5480143/91‑1 (MQ=255)

                                        tATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAtt                                                   <  2:1138219/91‑1 (MQ=255)

                                        tATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAtt                                                   <  2:3630160/91‑1 (MQ=255)

                                         aTTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTa                                                  >  1:502807/1‑91 (MQ=255)

                                         aTTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTa                                                  <  2:1489554/91‑1 (MQ=255)

                                         aTTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTa                                                  <  2:4783895/91‑1 (MQ=255)

                                          ttGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTaa                                                 <  1:390266/91‑1 (MQ=255)

                                          ttGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTaa                                                 >  2:1909228/1‑91 (MQ=255)

                                           tGAAATAATATAGAAATTGTCTTTTTTTTTTATTTTTTTATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAAt                                                >  2:1015454/1‑91 (MQ=37)

                                             aaaTAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATAc                                              <  1:4970983/91‑1 (MQ=255)

                                                 aataTAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaaaa                                          >  2:1946139/1‑91 (MQ=255)

                                                   tataGAAATTGTCTTTTTTATAAATTTTTTTATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                                        >  2:460977/1‑91 (MQ=255)

                                                   tataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                                        <  1:4760611/91‑1 (MQ=255)

                                                   tataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                                        >  2:304248/1‑91 (MQ=255)

                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                       >  1:2949048/1‑91 (MQ=255)

                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                      >  2:434616/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                     >  1:5640396/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                     >  2:3106407/1‑91 (MQ=255)

                                                        aaaTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGtt                                   <  1:3388550/91‑1 (MQ=255)

                                                         aaTTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtc                                  <  2:1468433/91‑1 (MQ=255)

                                                           ttGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtctc                                >  2:4461531/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                              >  1:2718811/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                              >  1:3107191/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                              >  1:351226/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                              >  1:1217496/1‑91 (MQ=255)

                                                              tCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt                             <  1:5122702/91‑1 (MQ=255)

                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                            <  2:2950666/91‑1 (MQ=255)

                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                          <  1:1667930/91‑1 (MQ=255)

                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                          <  1:3243298/91‑1 (MQ=255)

                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                          <  2:4242079/91‑1 (MQ=255)

                                                                  ttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGAc                         <  1:2428056/91‑1 (MQ=255)

                                                                  ttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGAc                         <  1:5220675/91‑1 (MQ=255)

                                                                    ttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACtt                       >  2:5633207/1‑91 (MQ=255)

                                                                       taAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAt                    >  1:2311645/1‑91 (MQ=255)

                                                                        aaaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAtt                   <  1:265429/91‑1 (MQ=255)

                                                                           ttttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAg                <  2:4165896/91‑1 (MQ=255)

                                                                           ttttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAg                <  1:4223878/91‑1 (MQ=255)

                                                                            tttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGt               <  1:3583903/91‑1 (MQ=255)

                                                                             ttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTc              <  1:3263254/91‑1 (MQ=255)

                                                                               ttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCt            <  2:278845/91‑1 (MQ=255)

                                                                                tGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTc           >  1:1796086/1‑91 (MQ=255)

                                                                                 gATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCg          >  2:635337/1‑91 (MQ=255)

                                                                                 gATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCg          >  2:801652/1‑91 (MQ=255)

                                                                                 gATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAATAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCg          >  2:3460460/1‑91 (MQ=255)

                                                                                  attattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCgg         >  1:3655793/1‑91 (MQ=255)

                                                                                  attattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCgg         <  2:3307151/91‑1 (MQ=255)

                                                                                     attTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgaca      <  1:1034285/91‑1 (MQ=255)

                                                                                      ttttCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacag     <  1:658455/91‑1 (MQ=255)

                                                                                         tCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacagaca  <  2:4326058/91‑1 (MQ=255)

GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGACA  >  USA300TCH1516_ALE/42474‑42653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.