| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2797815 | 293 (0.980) | 15 (0.060) | 11/142 | NT | 5.5% | intergenic (+103/+164) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | = 2797828 | 256 (0.970) | intergenic (+116/+151) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
Only 100 of 474 total aligned reads displayed.
ACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCA > USA300TCH1516_ALE/2797725‑2797905 | atttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGc < 2:4758241‑M1/9‑1 (MQ=255)atttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGc > 2:2558848‑M1/83‑91 (MQ=255)atttataaaatgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaaagACCCGAGGc < 2:3254579‑M1/9‑1 (MQ=255)aCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGC < 2:1144293‑M1/91‑1 (MQ=255)aCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGC > 1:1658522‑M1/1‑91 (MQ=255)aCCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGC > 1:662554‑M1/1‑91 (MQ=255) cGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCAtt > 1:1546534/1‑91 (MQ=255) gTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc > 1:496806/1‑91 (MQ=255) gTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTc < 1:2831573/91‑1 (MQ=255) aaaTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGt > 1:1167815/1‑91 (MQ=255) aTTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTc < 2:3859992/91‑1 (MQ=255) tttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCg < 1:4399769/91‑1 (MQ=255) tttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCg < 2:5061178/91‑1 (MQ=255) tgtgtgagatggcaattgaaacggatatgatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGCATTCAGTTCg > 2:461717‑M1/73‑91 (MQ=255) ttATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGa < 1:841963/91‑1 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGaa < 1:4558857/91‑1 (MQ=255) tataAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGaa > 2:3715338/1‑91 (MQ=255) tAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACg < 2:3917032‑M2/91‑2 (MQ=255) aGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcc < 1:3633351‑M2/91‑4 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCgttcgaactgaatgcct < 1:4103703‑M1/91‑18 (MQ=255) gTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcct > 1:2011501‑M2/1‑87 (MQ=255) tataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctc > 2:3022553‑M2/1‑86 (MQ=255) ataAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctcg > 1:3234104‑M2/1‑85 (MQ=255) ggcaattgaaacggatatcatgaggaacatttgaacataaaataatatatttatataaaacgACCCGAGGCATTCAGTTCGAACGCCTCgg > 1:5761700‑M1/63‑91 (MQ=255) aaaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATGTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctcggg > 2:4860390‑M2/1‑83 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctcgggt > 1:1419182‑M2/1‑82 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctcgggt > 2:2905292‑M2/1‑82 (MQ=255) aaCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACgcctcgggt < 1:2450333‑M2/91‑10 (MQ=255) aCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCgttcgaactgaatgcctcgggtt > 2:418947‑M1/1‑68 (MQ=255) aCAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTc < 1:3624611/91‑1 (MQ=255) aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGt < 2:3603517/91‑1 (MQ=255) aaGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGt < 2:5647782/91‑1 (MQ=255) aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGtt > 2:5011284/1‑91 (MQ=255) aGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGtt < 2:5390949/91‑1 (MQ=255) ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGttt > 1:414659/1‑91 (MQ=255) ggAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGttt < 2:3364944/91‑1 (MQ=255) gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat < 2:2210051/91‑1 (MQ=255) gTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtat > 1:4763159/1‑91 (MQ=255) tCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTtatat > 2:1320226/1‑91 (MQ=255) aCTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAat > 2:1023577/1‑91 (MQ=255) cTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAata < 2:3103755/91‑1 (MQ=255) ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 2:5545721/91‑1 (MQ=255) ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 2:1910424/91‑1 (MQ=255) ttAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 1:1900969/91‑1 (MQ=255) ttAAACATATGTCTGTTCATCAGTCTGATTTCTTATTCAATTAAACCCGGGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatat < 1:2413596/91‑1 (MQ=255) tAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatata < 2:4079590/91‑1 (MQ=255) aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatatat < 1:5331545/91‑1 (MQ=255) aaaCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAatatat > 1:2911660/1‑91 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta > 1:4266594/1‑91 (MQ=255) aCATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtatta > 1:2089112/1‑91 (MQ=255) cATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATAtattat < 2:228173/91‑1 (MQ=255) tatTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAttt < 2:5122030/91‑1 (MQ=255) tatTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAttt < 2:140486/91‑1 (MQ=255) tatTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTAttt < 1:3103491/91‑1 (MQ=255) ttCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTAt < 1:5406397/91‑1 (MQ=255) tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg > 2:5188365/1‑91 (MQ=255) tCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATg > 1:2347352/1‑91 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt > 1:2187145/1‑91 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 2:1703886/91‑1 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 2:5801958/91‑1 (MQ=255) tGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGtt < 2:2120936/91‑1 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa < 2:4971523/91‑1 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa > 1:2163064/1‑91 (MQ=255) ttCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCa > 1:4322971/1‑91 (MQ=255) tCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCaa < 1:5131899/91‑1 (MQ=255) cATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCGCGGGTCGTTTTATATAAATATATTATTTTATGTTCaaa < 1:5640602/91‑1 (MQ=255) aTAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAAt < 2:5267073/91‑1 (MQ=255) tAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATg < 1:283467/91‑1 (MQ=255) aaGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGt > 1:1778713/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat > 2:2851260/1‑91 (MQ=255) aTTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcat < 2:830791/91‑1 (MQ=255) tttCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCtcatc > 1:3444267/1‑91 (MQ=255) tCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTcatcat > 1:547484/1‑91 (MQ=255) cTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCata < 2:618810/91‑1 (MQ=255) ttATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCatat > 2:2801320/1‑91 (MQ=255) ttCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCg < 1:3782328/91‑1 (MQ=255) cAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGtt > 1:2269742/1‑91 (MQ=255) tAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCaa < 2:180706/91‑1 (MQ=255) tAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCaa < 1:5163149/91‑1 (MQ=255) aaaCCCGAGGCATTCAGTTCGAACgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttg < 1:1309357‑M2/91‑68 (MQ=255) aaCCCGAGGCATTCAGTTCGAACgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgt < 1:419382‑M2/91‑69 (MQ=255) aaCCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt > 2:3497507/1‑91 (MQ=255) aaCCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAAtt < 1:2708057/91‑1 (MQ=255) ACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATCTTATTTTATGTTCAACTGTTCCTCATCATATCCGTTTCAATTg < 2:4481005‑M1/91‑1 (MQ=255) CCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc < 2:4236463‑M1/91‑1 (MQ=255) CCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGc < 1:3312616‑M1/91‑1 (MQ=255) ccGAGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgttta > 1:3566125‑M1/1‑7 (MQ=255) ccaGGCATTCAGTTCGAACGCCTCGGGTCATATTATATAAATATATTATTTTATGTTCCAATGTCCCTCATCGTACCCGTTTCACTTGCCa > 1:4900293/3‑91 (MQ=255) CGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa < 1:1038857‑M1/91‑1 (MQ=255) CGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCa < 1:3917822‑M1/91‑1 (MQ=255) GAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAt > 1:3952712‑M1/1‑91 (MQ=255) gggcgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgagcagaaatatgtttaagtccgaactacttgtttatac < 2:3992632‑M1/90‑88 (MQ=255) aGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaactatgtttaagtccgaactccttgtttatac > 2:2399153‑M1/1‑4 (MQ=255) aGGCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatac > 1:4465947‑M1/1‑4 (MQ=255) AGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtc < 2:264611‑M1/91‑1 (MQ=255) ggCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatact < 1:5854431‑M1/91‑89 (MQ=255) ggCgttcgaactgaatgcctcgggtttaattgaataagaaatcagacttatgaacagaaatatgtttaagtccgaactccttgtttatact > 1:1007998‑M1/1‑3 (MQ=255) GGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCAtct > 2:3156708‑M1/1‑91 (MQ=255) CATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCa < 2:1545529‑M1/91‑1 (MQ=255) CATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCa < 1:5250846‑M1/91‑1 (MQ=255) | ACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCTGATTTCTTATTCAATTAAACCCGAGGCATTCAGTTCGAACGCCTCGGGTCGTTTTATATAAATATATTATTTTATGTTCAAATGTTCCTCATCATATCCGTTTCAATTGCCATCTCA > USA300TCH1516_ALE/2797725‑2797905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |