BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2792614 =	284 (0.950)	13 (0.050)	6/132	NT	5.7%	intergenic (+65/+47)	yvyI/yueB	Putative mannose‑6‑phosphate isomerase YvyI/ESX secretion system protein YueB
*	?	USA300TCH1516_ALE	2792656 =	193 (0.790)	13 (0.050)	6/132	NT	5.7%	intergenic (+107/+5)	yvyI/yueB	Putative mannose‑6‑phosphate isomerase YvyI/ESX secretion system protein YueB

Only 100 of 336 total aligned reads displayed.

CGTCCCATAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAACCTACAA  >  USA300TCH1516_ALE/2792566‑2792746

cGTCCCATAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTa                                                                                            <  2:107461/91‑1 (MQ=255)

 gTCCCATAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTaa                                                                                           <  1:2633854/91‑1 (MQ=255)

  tCCCATAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAAt                                                                                          >  1:5616322/1‑91 (MQ=255)

       tAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTa                                                                                     >  2:210460/1‑91 (MQ=255)

       tAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTa                                                                                     <  1:636987/91‑1 (MQ=255)

         aaaGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTAtt                                                                                   <  2:79204/91‑1 (MQ=255)

             aCAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGt                                                                               <  2:3254380/91‑1 (MQ=255)

              cAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTa                                                                              >  2:2385395/1‑91 (MQ=255)

              cAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTa                                                                              >  1:1851559/1‑91 (MQ=255)

               aGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTaa                                                                             >  2:533357/1‑91 (MQ=255)

                gAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAAc                                                                            <  2:4048723/91‑1 (MQ=255)

                 aaaTTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACg                                                                           <  2:89337/91‑1 (MQ=255)

                  aaTTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGt                                                                          >  2:4571584/1‑91 (MQ=255)

                      caaagtaacgttccagaataaaaattAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACt                                                                      >  2:3764792‑M1/27‑91 (MQ=255)

                      aCTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACt                                                                      >  2:714392/1‑91 (MQ=255)

                        tATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACttt                                                                    >  2:1211201/1‑91 (MQ=255)

                            tcttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTc                                                                <  2:3664285/91‑1 (MQ=255)

                            tcttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTc                                                                <  2:599706/91‑1 (MQ=255)

                            tcttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTc                                                                <  1:4283253/91‑1 (MQ=255)

                             cttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCa                                                               >  1:258523/1‑91 (MQ=255)

                             cttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTCTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCa                                                               <  1:4477029/91‑1 (MQ=255)

                              ttctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCaa                                                              >  1:5346158/1‑91 (MQ=255)

                               tctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAAc                                                             >  1:3388736/1‑91 (MQ=255)

                                ctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACt                                                            <  1:3746819/91‑1 (MQ=255)

                                ctGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATATAATTTTTATTCTGTAACGTTACTTTGGTCAACt                                                            <  2:3490239/91‑1 (MQ=255)

                                  gTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACttt                                                          <  1:5171719/91‑1 (MQ=255)

                                   tCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACtttt                                                         >  1:961504/1‑91 (MQ=255)

                                   tCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACtttt                                                         >  2:462383/1‑91 (MQ=255)

                                    cTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACttttt                                                        <  1:3536878/91‑1 (MQ=255)

                                      aaaaaCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCa                                                      <  1:2838153/91‑1 (MQ=255)

                                      aaaaaCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCa                                                      <  1:2257785/91‑1 (MQ=255)

                                       aaaaCATAAAAATCCACACATTAAGGAGCTATAACCCTGATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAg                                                     <  1:4844653/91‑1 (MQ=255)

                                         aaCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGAt                                                   <  2:576816/91‑1 (MQ=255)

                                         aaCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGAt                                                   <  1:4642089/91‑1 (MQ=255)

                                         aaCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGAt                                                   <  2:3127685/91‑1 (MQ=255)

                                          aCATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATa                                                  >  2:3879776/1‑91 (MQ=255)

                                           cATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATAc                                                 <  2:1784042/91‑1 (MQ=255)

                                           cATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATAc                                                 <  2:23286/91‑1 (MQ=255)

                                            aTAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATAcg                                                >  1:1000843/1‑91 (MQ=255)

                                            aTAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATAcg                                                >  2:5003545/1‑91 (MQ=255)

                                            aTAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATAcg                                                >  1:3955627/1‑91 (MQ=255)

                                              aaaaaTCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTTTTTTGTATCGTTACTTTAGTCAACTTTTTCAGATAcgct                                              >  2:2183214/1‑90 (MQ=255)

                                               aaaaTCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACgcgc                                             <  1:1713567/91‑1 (MQ=255)

                                               aaaaTCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACgcgc                                             >  1:1766335/1‑91 (MQ=255)

                                                AAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCt                                            >  2:4373811‑M1/1‑91 (MQ=255)

                                                AAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCt                                            <  1:5514860‑M1/91‑1 (MQ=255)

                                                 AATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCtt                                           <  2:2641264‑M1/91‑1 (MQ=255)

                                                   TCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTtca                                         >  1:4682640‑M1/1‑91 (MQ=255)

                                                    CCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTTTTTTACGCTCTtcat                                        <  2:1609394‑M1/91‑1 (MQ=255)

                                                     cgCACATTAAGGAGCTATAACCCTAGTGTGTGGATTTAATTTGTTTTCTGTGACGTTACTTTGGTCAACTTTTTCAGATACGCGCTtcatc                                       >  1:2002470‑M1/3‑91 (MQ=255)

                                                     cacacattagggttatagctccttaatgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTtcatc                                       >  1:5680929‑M2/38‑91 (MQ=255)

                                                     cacacaTTAAGGAGCTATAACCCTAAGGTGTGGATTTAATTTGTATTCTGTAACGTTAAATTGGTCAGCTTTTTATGATACGCGCTtcatc                                       >  2:5317677/1‑91 (MQ=255)

                                                     CACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTtcatc                                       >  2:4746634‑M1/1‑91 (MQ=255)

                                                      ACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTtcatca                                      >  1:4013515‑M1/1‑91 (MQ=255)

                                                       CACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCaa                                     <  2:255811‑M1/91‑1 (MQ=255)

                                                       CACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCaa                                     <  2:2819923‑M1/91‑1 (MQ=255)

                                                        ACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAAt                                    <  2:424672‑M1/91‑1 (MQ=255)

                                                         CATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATg                                   <  1:3001375‑M1/91‑1 (MQ=255)

                                                         CATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATg                                   <  2:965429‑M1/91‑1 (MQ=255)

                                                         CATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATg                                   <  1:1339061‑M1/91‑1 (MQ=255)

                                                         CATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATg                                   <  1:1271461‑M1/91‑1 (MQ=255)

                                                         CATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATg                                   >  1:3108511‑M1/1‑91 (MQ=255)

                                                              gggttatagctccttaatgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCt                              >  1:3874627‑M2/29‑91 (MQ=255)

                                                              gggttatagctccttaatgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCt                              >  2:2986541‑M2/29‑91 (MQ=255)

                                                              aGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCt                              <  1:1167578/91‑1 (MQ=255)

                                                              aGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCt                              >  2:2511849/1‑91 (MQ=255)

                                                               ggAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCCCTGGATCTg                             >  2:2778656/1‑91 (MQ=255)

                                                               ggAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTg                             <  1:2379940/91‑1 (MQ=255)

                                                               ggAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTg                             >  1:2733488/1‑91 (MQ=255)

                                                               ggAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTg                             >  2:3339036/1‑91 (MQ=255)

                                                                taGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCGTCATCAATGGATCTGt                            <  2:5024957/90‑1 (MQ=255)

                                                                gAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGt                            <  1:1511808/91‑1 (MQ=255)

                                                                gAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGt                            <  2:702822/91‑1 (MQ=255)

                                                                gAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGt                            <  1:280777/91‑1 (MQ=255)

                                                                gAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGt                            <  2:554250/91‑1 (MQ=255)

                                                                gAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGt                            >  2:2438439/1‑91 (MQ=255)

                                                                 aGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGtt                           >  1:862718/1‑91 (MQ=255)

                                                                 aGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGtt                           <  1:1569778/91‑1 (MQ=255)

                                                                   cTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTAc                         <  1:5110895/91‑1 (MQ=255)

                                                                   cTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTAc                         <  2:5452801/91‑1 (MQ=255)

                                                                    tataACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACa                        >  2:190374/1‑91 (MQ=255)

                                                                        aCCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGtt                    >  1:4774558/1‑91 (MQ=255)

                                                                         cccTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGttt                   >  2:1498514/1‑91 (MQ=255)

                                                                         cccTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGttt                   >  2:1461773/1‑91 (MQ=255)

                                                                         cccTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGttt                   >  1:514971/1‑91 (MQ=255)

                                                                         cccTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGttt                   <  1:442162/91‑1 (MQ=255)

                                                                           cTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTa                 <  2:3813608/91‑1 (MQ=255)

                                                                           cTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTa                 >  1:4069124/1‑91 (MQ=255)

                                                                              atgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTaaaa              >  2:2944993‑M2/13‑91 (MQ=255)

                                                                              atgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTaaaa              <  2:1536622‑M2/79‑1 (MQ=255)

                                                                               tgtgtggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAAt             <  2:2061001‑M2/80‑1 (MQ=255)

                                                                                   tggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTaaa         >  1:3690100‑M2/8‑91 (MQ=255)

                                                                                   tggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTaaa         >  2:3226916‑M2/8‑91 (MQ=255)

                                                                                   tggatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTaaa         >  2:4021574‑M2/8‑91 (MQ=255)

                                                                                    ggaattAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAAc        <  2:5602787‑M2/85‑1 (MQ=255)

                                                                                     gatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTCAAcc       >  2:5155999‑M2/6‑91 (MQ=255)

                                                                                     gatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAAcc       <  2:5710433‑M2/86‑1 (MQ=255)

                                                                                     gatttAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAAcc       >  1:5202018‑M2/6‑91 (MQ=255)

                                                                                          aaTTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAACCTACaa  <  2:4670881/91‑1 (MQ=255)

                                                                                          aaTTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAACCTACaa  <  1:776660/91‑1 (MQ=255)

CGTCCCATAAAAGACAGAAATTACTATCTCTTCTGTCTAAAAACATAAAAATCCACACATTAAGGAGCTATAACCCTAATGTGTGGATTTAATTTTTATTCTGTAACGTTACTTTGGTCAACTTTTTCAGATACGCGCTTCATCAATGGATCTGTTACAGGTTTTAAAATTAAACCTACAA  >  USA300TCH1516_ALE/2792566‑2792746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.