| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580557 = | 286 (0.960) | 33 (0.120) | 11/148 | NT | 11.7% | intergenic (+192/‑416) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580587 = | 232 (0.840) | intergenic (+222/‑386) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580652‑2580557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTT > USA300TCH1516_ALE/2580587‑2580676 CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCAT < 2:633734/91‑1CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCAT < 2:261981/91‑1CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCAT < 1:5150697/91‑1CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCAT < 2:4475899/91‑1CCCCAACTTGCATTACCTGTAGAATTTCTTTTCGAAATACTCTGTGTTGGAGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCAT < 1:4867660/91‑1 CCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATT > 2:1353281/1‑91 CCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATT < 1:5120421/91‑1 CCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATT < 1:3752382/91‑1 CCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATT > 1:3112178/1‑91 CCCAACTTGCATGGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATT < 2:4496544/91‑1 CCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTT < 1:78746/91‑1 CCAACTTGCATTGCCTGTAGAATTTCTTTTAGAAATTCTCTGTGTTGTGGCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTT < 2:2685229/91‑1 CAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGTGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTT < 2:2745406/91‑1 CAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTT < 1:3624997/91‑1 AACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTC > 2:888399/1‑91 AACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTC > 2:3106065/1‑91 ACTTGCATTGCCTGTAGAATTTCTTTTCGACATTCTCTGTGTTGGGGCCCGTGACTAGAATGGAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:1462707/91‑1 ACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:1878886/91‑1 ACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:2510301/91‑1 ACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG > 1:3970790/1‑91 ACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG < 1:618908/91‑1 ACTTGCATTGCCTGTAGAATTTCTTGTCGAAATTCTCTGTGTTGGGGCCTCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:5423231/91‑1 ACTTGCATTGCCTGTAGAATTTCTTATCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:5422903/91‑1 CCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTT < 1:2910771/78‑1 CCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTT > 2:2910771/1‑78 AATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAT > 1:2332717/1‑91 TGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAA > 1:2708129/1‑91 GGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACCCAGAGAATTTCGAAAAGAAATTC > 2:3031177/1‑91 CTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAG > 2:3387726/1‑91 CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATG > 1:3112823/1‑91 GAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCga > 1:4117918/1‑89 GAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCga > 1:5040953/1‑89 aattGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAG > 2:5377495/5‑91 ATCGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGT > 1:346493/1‑91 TCGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTT > 2:4209802/1‑91 tGAAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGT > 1:3033308/2‑91 GAAAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTT > 1:4260176/1‑91 GAAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACTTAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTT > 2:3677/1‑91 AAAAAAGCTTGTTGCAAGCGCATTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTG > 1:2619978/1‑91 AAAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTcg > 2:1735271/1‑89 AAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTG > 1:2447886/1‑91 AAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTG > 2:4106535/1‑91 AAAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTG > 2:3614530/1‑91 AAAAAGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGG > 1:3990222/1‑91 AAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGG > 1:4321176/1‑91 AAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGG > 1:4596453/1‑91 AAAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGG > 2:1246246/1‑91 AAAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGG > 2:2368316/1‑91 AAAAGCTTATTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGG > 2:5678683/1‑91 AAAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGG > 2:1191489/1‑91 AAGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGT > 2:3225070/1‑91 AGCTTGTTGCAAGCGCATTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTG > 2:2272270/1‑91 AGCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTG > 2:4573692/1‑91 AGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTG > 1:1991618/1‑91 AGCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTG > 2:4594274/1‑91 GCTTGTTACAAGCGCATTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGG > 1:2712897/1‑91 GCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGt > 1:2195345/1‑90 GCTTGTTACAAGCGCATTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGt > 2:1948145/1‑90 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA < 1:5595845/91‑1 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA < 1:535/91‑1 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA < 1:3341667/91‑1 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA > 2:4393016/1‑91 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA < 2:5812457/91‑1 TTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAA < 1:4475899/91‑1 TTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAT > 1:2359462/1‑91 TTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAT < 1:3725024/91‑1 TTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAT > 1:4729045/1‑91 TTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAT < 1:4791760/91‑1 TTTCGATTCTACTCAGGGTCCCCAACACAGAGAATTTCGAAGAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGAGGATAAAGAAAT < 2:5835068/91‑1 TTCGATTTTATTCAGGGGCACCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGTGTGGGACGACGATAAAGAAATA > 2:4591194/1‑91 TTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATA > 1:1589028/1‑91 TTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATA < 1:789930/91‑1 TTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATA < 1:1367872/91‑1 TTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATA < 2:1228084/91‑1 TTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATA > 2:5334341/1‑91 TCGATTCTAGTTAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATAC > 2:309931/1‑91 TCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATAC > 1:2301065/1‑91 TCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATAC > 1:1577364/1‑91 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT < 2:4489382/91‑1 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT > 1:4330775/1‑91 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT < 2:3330532/91‑1 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT < 2:3176450/91‑1 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT < 2:3176016/91‑1 CGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACT > 1:875871/1‑91 GATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGGTGGGGTGGGACGACGATAAAGAAATACTT > 1:5291754/1‑91 CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAAAAGCTTGTTACAAGCGCATTTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2580652‑2580557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTT > USA300TCH1516_ALE/2580587‑2580676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |