| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2580557 = | 286 (0.960) | 33 (0.120) | 11/148 | NT | 11.7% | intergenic (+192/‑416) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase |
| ? | USA300TCH1516_ALE | 2580587 = | 232 (0.840) | intergenic (+222/‑386) | yveA/pnbA | Aspartate‑proton symporter/Para‑nitrobenzyl esterase | |||||
Only 100 of 360 total aligned reads displayed.
GCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTT > USA300TCH1516_ALE/2580497‑2580677 | cTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGAt < 2:2218800/91‑1 (MQ=33) cTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGAt < 2:4986952/91‑1 (MQ=33) cTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGAt > 1:3405456/1‑91 (MQ=33) tcgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCAATTc > 1:4117918‑M1/58‑91 (MQ=255) gggACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTc > 1:2328303/1‑91 (MQ=34) cattgcctgtagaatttcttttcgaaattctctatgttggggcccctgactgaaCGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAg > 1:3112823‑M1/55‑91 (MQ=255) aTCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAggg > 1:3176016/1‑91 (MQ=34) aTCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAggg < 2:4514188/91‑1 (MQ=34) tCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAgggg < 1:1628060/91‑1 (MQ=34) tCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAgggg < 1:3949455/91‑1 (MQ=34) cAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGc < 1:2640949/91‑1 (MQ=34) cAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGc > 2:3638324/1‑91 (MQ=34) cAATGTTCAAGGCTCTACGAAGTTATATTTGGAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGc < 2:2504063/91‑1 (MQ=11) gaatttcttttcgaaattctctgggttggggcccctgactagaatCGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGcc > 2:3031177‑M1/46‑91 (MQ=255) aaTGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGcc > 2:4791760/1‑91 (MQ=34) aTGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGccc < 2:550100/91‑1 (MQ=34) tGTTCTATGCTCTACGAAGTTATATTGGCACTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGCCAGGGGccgc > 2:4654027/1‑89 (MQ=255) ttCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCaa > 1:1855641/1‑91 (MQ=34) tCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAac > 1:2826183/1‑91 (MQ=34) cTATGCTCTACGAAGTTATATTGGCAGTAGTCGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAaca > 1:5725435/1‑91 (MQ=21) tGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACag < 2:1526010/91‑1 (MQ=33) gCTCTACGAAGTGATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACaga < 2:3726571/91‑1 (MQ=21) tctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAgaga < 2:877848/91‑1 (MQ=34) ctACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGaa > 2:706596/1‑91 (MQ=34) tACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAt > 2:4073319/1‑91 (MQ=34) aCGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACagag < 2:1427645/87‑1 (MQ=35) aCGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAtt < 1:1469506/91‑1 (MQ=34) cGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAAttt > 1:4574859/1‑91 (MQ=34) aaGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCg > 2:4346321/1‑91 (MQ=34) aGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGa > 2:1130970/1‑91 (MQ=33) aGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGa < 1:2258277/91‑1 (MQ=34) gTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa > 1:2398794/1‑91 (MQ=34) gTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa > 1:3675592/1‑91 (MQ=34) atatTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAg > 2:2896744/1‑91 (MQ=34) atatTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAg < 1:2744482/91‑1 (MQ=34) atTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaa < 2:3425782/91‑1 (MQ=34) atTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaa < 2:5578822/91‑1 (MQ=34) atTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaa < 2:3054867/91‑1 (MQ=33) ttGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaaa > 2:425179/1‑91 (MQ=34) ttGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaaa < 2:108278/91‑1 (MQ=34) ttGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaaa < 1:611462/91‑1 (MQ=34) ttGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaaa > 1:4926622/1‑91 (MQ=34) cAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCt > 1:4361421/1‑91 (MQ=34) agtagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTa > 1:2196855/1‑91 (MQ=34) gtagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTAc > 1:1114793/1‑91 (MQ=34) gtagtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTAc < 1:2516481/91‑1 (MQ=34) ctgactagagttgaaaaaagcttgttgcaagcgcattttcaACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAg > 2:3387726‑M2/42‑91 (MQ=255) gtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAgg > 1:5509830/1‑91 (MQ=34) gtTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAgg > 2:5209369/1‑91 (MQ=33) tGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTACACAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCa > 2:5681876/1‑91 (MQ=255) gACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGTTTTTTGTCAGGGGCCCCAACACAGAGAATCTGGAAAAGAAATTCTACAGGaaa > 2:4141887/1‑91 (MQ=11) gACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCaa < 2:1017354/91‑1 (MQ=34) gACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCaa < 1:3310696/91‑1 (MQ=34) cTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg < 2:3306703/91‑1 (MQ=33) cTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg < 2:739959/91‑1 (MQ=34) cTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg < 2:387840/91‑1 (MQ=34) cTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg < 2:216731/91‑1 (MQ=34) gAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCa < 2:2328303/91‑1 (MQ=34) aattgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 2:5377495‑M2/34‑91 (MQ=255) atcgaaaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt > 1:346493‑M2/33‑91 (MQ=255) aCGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 2:2489717/1‑91 (MQ=34) aCGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAg > 1:1539306/1‑91 (MQ=34) tgaaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt > 1:3033308‑M2/31‑91 (MQ=255) CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGt < 2:1878886‑M1/91‑1 (MQ=255) CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGAGGCCCCAACACAGAGAATTTCGACAAGAAATTCTACAGGCAATGCAAGt < 2:5423231‑M1/91‑1 (MQ=255) aaaaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAagtcg > 2:1735271‑M2/29‑89 (MQ=255) aaaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTg > 1:2447886‑M2/29‑91 (MQ=255) aaaaagcttgttacaagcgcattttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgg > 1:3990222‑M2/28‑91 (MQ=255) aaaaagcttgttacaagcgcattttcg‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg > 1:4321176‑M2/28‑91 (MQ=255) aaaaagcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgg > 2:1246246‑M2/28‑91 (MQ=255) AAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgg < 1:78746‑M1/91‑1 (MQ=255) AATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTggg < 1:5120421‑M1/91‑1 (MQ=255) AATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTggg < 1:3752382‑M1/91‑1 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCTCCAACACAGAGTATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTgggg < 1:4867660‑M1/91‑1 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg < 2:261981‑M1/91‑1 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg < 2:633734‑M1/91‑1 (MQ=255) ATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgggg < 2:4475899‑M1/91‑1 (MQ=255) gcgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTg > 2:1688407/1‑91 (MQ=37) gcgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTg > 1:4657592/1‑91 (MQ=37) agcttgttacaagcgcattttcaATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTg > 1:1991618‑M2/24‑91 (MQ=255) cgcTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTgg > 1:2174689/1‑91 (MQ=38) cTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGga > 1:1677736/1‑91 (MQ=40) cTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGga > 1:2285593/1‑91 (MQ=40) ttGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGgac > 1:3280231/1‑91 (MQ=255) aaCAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGacgacg < 1:2141549/91‑1 (MQ=255) aCAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGAcgacga < 1:2896744/91‑1 (MQ=255) aGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATaa < 1:3638324/91‑1 (MQ=255) gCTTTTTTCTATTCTATTCAGGGGCCCAAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGTGGTGGGACGACGATaaa > 2:3121785/1‑91 (MQ=17) tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 1:101274/91‑1 (MQ=255) tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 2:4025784/91‑1 (MQ=255) tttttCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaa < 1:4160634/91‑1 (MQ=255) ttttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa < 2:5812457‑M2/85‑1 (MQ=255) ttttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGaaa < 1:4475899‑M2/85‑1 (MQ=255) tttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAAt > 1:4729045‑M2/6‑91 (MQ=255) ttcgATTTTATTCAGGGGCACCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGTGTGGGACGACGATAAAGAAATa > 2:4591194‑M2/5‑91 (MQ=255) ttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATa > 2:5334341‑M2/5‑91 (MQ=255) ttcgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATa < 1:1367872‑M2/87‑1 (MQ=255) cgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACt < 2:3176016‑M2/89‑1 (MQ=255) cgATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACt > 1:875871‑M2/3‑91 (MQ=255) gATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGGTGGGGTGGGACGACGATAAAGAAATACtt > 1:5291754‑M2/2‑91 (MQ=255) | GCTGGGACATAAATCAATGTTCTATGCTCTACGAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGATAAAGAAATACTTT > USA300TCH1516_ALE/2580497‑2580677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |