BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	118853 =	362 (1.210)	17 (0.070)	10/140	NT	5.7%	intergenic (+401/+92)	norB_1/USA300HOU_RS00550	Quinolone resistance protein NorB/hypothetical protein
*	?	USA300TCH1516_ALE	118888 =	248 (0.950)	17 (0.070)	10/140	NT	5.7%	intergenic (+436/+57)	norB_1/USA300HOU_RS00550	Quinolone resistance protein NorB/hypothetical protein

Only 100 of 411 total aligned reads displayed.

AGCATTATTATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCATCTGTA  >  USA300TCH1516_ALE/118798‑118978

  cATTATTATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACa                                                                                           <  1:4539341/91‑1 (MQ=255)

  cATTATTATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACa                                                                                           <  1:26867/91‑1 (MQ=255)

   attattATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACAt                                                                                          >  1:4141235/1‑91 (MQ=255)

   attattATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACAt                                                                                          >  1:5457253/1‑91 (MQ=255)

   attattATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACAt                                                                                          >  1:912817/1‑91 (MQ=255)

    ttattaTATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATg                                                                                         <  1:1680889/91‑1 (MQ=255)

     tattatATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTATACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGc                                                                                        >  2:4819492/1‑91 (MQ=255)

     tattatATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGc                                                                                        >  1:2351369/1‑91 (MQ=255)

        tataTCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATc                                                                                     <  1:5052461/91‑1 (MQ=255)

        tataTCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATc                                                                                     >  1:1606921/1‑91 (MQ=255)

        tataTCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATc                                                                                     >  1:1943340/1‑91 (MQ=255)

         atatCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCt                                                                                    >  2:4336548/1‑91 (MQ=255)

            tCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGaa                                                                                 >  2:3054003/1‑91 (MQ=255)

            tCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGaa                                                                                 >  2:14083/1‑91 (MQ=255)

            tCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGaa                                                                                 >  2:2241571/1‑91 (MQ=255)

             cAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAAt                                                                                >  2:4461946/1‑91 (MQ=255)

               gtgtTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAAtct                                                                              <  1:4766382/91‑1 (MQ=255)

               gtgtTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAAtct                                                                              >  2:1873434/1‑91 (MQ=255)

                  tttATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTa                                                                           >  2:4249863/1‑91 (MQ=255)

                   ttATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTaa                                                                          <  1:2418240/91‑1 (MQ=255)

                    tataGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑t                                                                        >  2:2008897/1‑91 (MQ=255)

                     ataGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tt                                                                       >  2:5403391/1‑91 (MQ=255)

                     ataGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tt                                                                       <  2:2464853/91‑1 (MQ=255)

                     ataGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tt                                                                       >  1:3955532/1‑91 (MQ=255)

                      taGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑ttt                                                                      >  2:3552505/1‑91 (MQ=255)

                      taGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tat                                                                      <  2:4573480/91‑3 (MQ=255)

                       aGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tttt                                                                     <  1:518466/91‑1 (MQ=255)

                       aGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑tttt                                                                     <  1:4696493/91‑1 (MQ=255)

                        gCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTa                                                                    >  2:1335998/1‑91 (MQ=255)

                        gCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTa                                                                    >  2:3297203/1‑91 (MQ=255)

                        gCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTa                                                                    >  1:1026628/1‑91 (MQ=255)

                            aTTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTaaaaa                                                                <  1:5392389/91‑1 (MQ=255)

                            aTTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTaaaaa                                                                <  2:4182991/91‑1 (MQ=255)

                             attAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTaaaaaa                                                               >  2:770255/2‑91 (MQ=255)

                              ttAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTaaaaaaa                                                              <  1:1509583/91‑1 (MQ=255)

                               tAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAat                                                             >  2:2159893/1‑91 (MQ=255)

                                aaGATAATAAATTTTGCTAAACAAAAAAGCCAAACCATGAATGTTGTATTGGCTTTTTACATGCATCTGAATCTATAA‑TTTAAAAAAAata                                                            <  2:2417687/91‑1 (MQ=255)

                                 aGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAatat                                                           <  1:5651531/91‑1 (MQ=255)

                                 aGATAATAAATTTTGCTAAACAAAAAAGCCAACACATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAatat                                                           >  1:5820392/1‑91 (MQ=255)

                                  gATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATg                                                          <  1:245731/91‑1 (MQ=255)

                                  gATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATg                                                          <  1:3075612/91‑1 (MQ=255)

                                  gATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATg                                                          <  2:2845307/91‑1 (MQ=255)

                                  gATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCAACTGAATCTCTAA‑TTTTAAAAAAATATg                                                          >  2:3848962/1‑91 (MQ=255)

                                    taataaATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGaa                                                        <  1:1831113/91‑1 (MQ=255)

                                    taataaATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGaa                                                        >  2:5456848/1‑91 (MQ=255)

                                      ataaATTTTGCTAAACAAAAAAGCTAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAata                                                      <  1:5541463/91‑1 (MQ=255)

                                      ataaATTTTGCGAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAata                                                      <  1:847742/91‑1 (MQ=255)

                                          aTTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATataaa                                                  <  1:3478780/91‑1 (MQ=255)

                                          aTTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATataaa                                                  >  2:1123834/1‑91 (MQ=255)

                                           ttttGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATataaat                                                 >  1:593290/1‑91 (MQ=255)

                                              tGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAg                                              <  2:675534/91‑1 (MQ=255)

                                               gCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGa                                             >  2:2572293/1‑91 (MQ=255)

                                               gCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGa                                             >  2:3780925/1‑91 (MQ=255)

                                               gCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTATAA‑AAATAAAAAAATATGAATATAAATAAGa                                             <  2:4022434/91‑1 (MQ=255)

                                                 tAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACa                                           >  2:603647/1‑91 (MQ=255)

                                                  aaaCAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAg                                          >  1:1280127/1‑91 (MQ=255)

                                                   aaCAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGt                                         <  1:2099223/91‑1 (MQ=255)

                                                   aaCAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTAAATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGt                                         >  2:1975332/1‑91 (MQ=255)

                                                       AAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTaaaa                                     >  2:291147‑M1/1‑91 (MQ=255)

                                                         AAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaat                                   <  2:4734542‑M1/91‑1 (MQ=255)

                                                          AAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaatt                                  <  1:1377680‑M1/91‑1 (MQ=255)

                                                            GCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaa                                <  2:268371‑M1/91‑1 (MQ=255)

                                                            GCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaa                                <  1:3004634‑M1/91‑1 (MQ=255)

                                                            GCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaa                                >  2:1479510‑M1/1‑91 (MQ=255)

                                                            GCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaa                                >  1:3552505‑M1/1‑91 (MQ=255)

                                                             CCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaa                               <  2:1678213‑M1/91‑1 (MQ=255)

                                                              caatccaacattcatgggttggctttttACATGCATCTGAATCTCTAATTTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaa                               >  2:4119106‑M2/29‑91 (MQ=255)

                                                              CAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaat                              <  1:3298183‑M1/91‑1 (MQ=255)

                                                               aatccaacattcatgggttggctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaatt                             >  2:5680584‑M2/28‑91 (MQ=255)

                                                               AACCCATGTATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaatt                             >  2:3513495‑M1/1‑91 (MQ=255)

                                                               AACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaatt                             <  1:3363339‑M1/91‑1 (MQ=255)

                                                               AACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaatt                             >  1:121664‑M1/1‑91 (MQ=255)

                                                               AACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAaaattaaatt                             >  1:4346964‑M1/1‑91 (MQ=255)

                                                                 cccATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAACAAATATGAATATAAATAAGACAGTAAAAATTAAATTTc                           >  1:4851136/1‑91 (MQ=255)

                                                                  ccATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCa                          <  1:1997345/91‑1 (MQ=255)

                                                                   caacattcatgggttggctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAg                         >  2:2301792‑M2/24‑91 (MQ=255)

                                                                   caacattcatgggttggctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAg                         >  2:3199743‑M2/24‑91 (MQ=255)

                                                                    aTGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAgt                        <  1:4249863/91‑1 (MQ=255)

                                                                    aTGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAgt                        <  2:3915592/91‑1 (MQ=255)

                                                                      gAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAgttg                      <  1:3899065/91‑1 (MQ=255)

                                                                      cattcatgggttggctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAgttg                      >  1:279297‑M2/21‑91 (MQ=255)

                                                                        aTGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAGTTTCAgttgtt                    <  2:5820392/91‑1 (MQ=255)

                                                                         tGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGttgttg                   <  1:2241571/91‑1 (MQ=255)

                                                                         tGTTGGATTGGCTTTTTACATGCATCTGAATCTATAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGttgttg                   <  1:5710304/91‑1 (MQ=255)

                                                                          gTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGc                  <  1:256684/91‑1 (MQ=255)

                                                                          gTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGc                  <  2:3952574/91‑1 (MQ=255)

                                                                           ttGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCa                 >  2:4394196/1‑91 (MQ=255)

                                                                           ttGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCa                 >  1:2965311/1‑91 (MQ=255)

                                                                            tGGATTGGCTTTTTACATGCATCTGAAGCACTAA‑ATATAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCaa                <  2:1229286/91‑1 (MQ=255)

                                                                             ggATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAAt               <  1:3683831/91‑1 (MQ=255)

                                                                             ggATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAAt               >  2:2076508/1‑91 (MQ=255)

                                                                               aTTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAAttt             >  1:2900501/1‑91 (MQ=255)

                                                                                ttggctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATttc            <  2:5260221‑M2/81‑1 (MQ=255)

                                                                                   gctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATttcttc         >  2:554641‑M2/8‑91 (MQ=255)

                                                                                    ctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCa        >  2:370863‑M2/7‑91 (MQ=255)

                                                                                    ctttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCa        <  2:3208914‑M2/85‑1 (MQ=255)

                                                                                     tttttACATGCATCTGAATCTCTAA‑TTTTAAAAAGTTATGAATACAAATAAGACAGTAAAAATTACATTTCAGTTGTTGCAATTTCTTCAt       <  2:4913931‑M2/86‑1 (MQ=255)

                                                                                     tttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTGCTTCAt       <  1:3230350‑M2/86‑1 (MQ=255)

                                                                                      ttttACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCATc      <  2:494605‑M2/87‑1 (MQ=255)

                                                                                       tttACATGCATCTGAATCTCTAA‑TTTTAAAATAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCATCt     >  2:5057620‑M2/4‑91 (MQ=255)

AGCATTATTATATCAGTGTTTATAGCCGATTTAAGATAATAAATTTTGCTAAACAAAAAAGCCAACCCATGAATGTTGGATTGGCTTTTTACATGCATCTGAATCTCTAA‑TTTTAAAAAAATATGAATATAAATAAGACAGTAAAAATTAAATTTCAGTTGTTGCAATTTCTTCATCTGTA  >  USA300TCH1516_ALE/118798‑118978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.