BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2847730 =	219 (0.730)	12 (0.050)	10/132	NT	5.7%	intergenic (+39/+110)	yceI/USA300HOU_RS14590	Protein YceI/Lactonase drp35
*	?	USA300TCH1516_ALE	2847769 =	219 (0.890)	12 (0.050)	10/132	NT	5.7%	intergenic (+78/+71)	yceI/USA300HOU_RS14590	Protein YceI/Lactonase drp35

Only 100 of 383 total aligned reads displayed.

AATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTT  >  USA300TCH1516_ALE/2847679‑2847859

 aTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttttt                                                                                           >  1:735832/1‑91 (MQ=255)

 aTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttttt                                                                                           <  2:4185543/91‑1 (MQ=255)

 aTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttttt                                                                                           >  2:466582/1‑91 (MQ=255)

  tctcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTc                                                                                          <  1:3962152/91‑1 (MQ=255)

    tcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGt                                                                                        <  2:4058321/91‑1 (MQ=255)

      aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                                      <  1:3425239/91‑1 (MQ=255)

      aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                                      >  2:1387243/1‑91 (MQ=255)

      aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt                                                                                      <  1:4684844/91‑1 (MQ=255)

       gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa                                                                                     >  2:616797/1‑91 (MQ=255)

       gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa                                                                                     >  2:630016/1‑91 (MQ=255)

       gAATAATCTCATTACACAATACGCATTGTTTTAATATATCTACGAAATGCCAACTATATCATCCCTAGGTATCGTTGGCATTTTACGTTTa                                                                                     >  2:324993/1‑91 (MQ=255)

        ttagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    >  2:1749355‑M1/44‑91 (MQ=255)

        aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    <  2:4986890/91‑1 (MQ=255)

        aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTaa                                                                                    <  2:2073512/91‑1 (MQ=255)

            atCTCATTACACAAACATCATTGTTTTAATATATATACGAAATGCCAACTATATCATCACTCGGTATAGTTGGCATTTTCCGTTTATCTCa                                                                                >  2:1506387/1‑91 (MQ=255)

             tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt                                                                               >  1:2320523/1‑91 (MQ=255)

             tctcATTACACAATCCTCATTGCTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt                                                                               >  2:4463323/1‑91 (MQ=255)

              ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              <  1:4638832/91‑1 (MQ=255)

              ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg                                                                              <  1:4785945/91‑1 (MQ=255)

                 aTTACACAATCCTCATTGTTTTAATCTATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                                           >  2:1977137/1‑91 (MQ=255)

                 aTTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATgtgt                                                                           >  2:875012/1‑91 (MQ=255)

                    acacAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAAc                                                                        <  2:3386924/91‑1 (MQ=255)

                      acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa                                                                      >  1:5458998/1‑91 (MQ=255)

                       caATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAg                                                                     <  1:2928418/91‑1 (MQ=255)

                       caATCCTCATTGTGTTAATCTATATACGACATGCCAACTTTATCCTCCCTAGGTATAGTTGGCCTTTTTCGTTTAACTCTGTTGTATCAAg                                                                     <  2:1464982/91‑1 (MQ=255)

                        aaTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGc                                                                    <  2:1617227/91‑1 (MQ=255)

                         aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                                   <  1:2444961/91‑1 (MQ=255)

                         aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                                   >  2:3489942/1‑91 (MQ=255)

                         aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa                                                                   >  1:5702917/1‑91 (MQ=255)

                          tCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCAc                                                                  <  1:442979/91‑1 (MQ=255)

                          tCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCAc                                                                  <  2:3963261/91‑1 (MQ=255)

                          tCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCAc                                                                  <  2:754011/91‑1 (MQ=255)

                           ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt                                                                 <  1:1120084/91‑1 (MQ=255)

                            cTCATTGTTTTACTCTCTATACGAGATGCCACCTATATCATCCCTCGGTATAATTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTa                                                                <  2:5291629/91‑1 (MQ=255)

                            cTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTa                                                                >  1:307879/1‑91 (MQ=255)

                             tCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTaa                                                               <  1:4250296/91‑1 (MQ=255)

                               aTTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACt                                                             <  1:5776752/91‑1 (MQ=255)

                               aTTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGAATAGTTGGCATTTTTCGTGTATGTCATGTCTAACAAGCACTAACt                                                             >  2:5756041/1‑91 (MQ=255)

                               aTTGTTTTAATATATAGACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTGAACTCATGTGTAACAAGCACTAACt                                                             <  2:5581428/91‑1 (MQ=255)

                                ttGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTg                                                            <  2:5127215/91‑1 (MQ=255)

                                 tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt                                                           >  1:2057403/1‑91 (MQ=255)

                                    tttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCa                                                        <  2:681367/91‑1 (MQ=255)

                                     ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                                       >  2:2565150/1‑91 (MQ=255)

                                     ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                                       <  2:2456632/91‑1 (MQ=255)

                                     ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc                                                       <  2:947109/91‑1 (MQ=255)

                                      tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc                                                      <  1:2693879/91‑1 (MQ=255)

                                       aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc                                                     <  2:1026594/91‑1 (MQ=255)

                                        atatatatACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCt                                                    <  2:266688/91‑1 (MQ=255)

                                         tatatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTa                                                   >  1:5194075/1‑91 (MQ=255)

                                          atatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTaa                                                  >  1:1482490/1‑91 (MQ=255)

                                           tatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAt                                                 <  2:3005441/91‑1 (MQ=255)

                                             tataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAttt                                               <  1:220018/91‑1 (MQ=255)

                                              ataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtttt                                              >  1:2597738/1‑91 (MQ=255)

                                                aCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAg                                            <  2:1823509/91‑1 (MQ=255)

                                                 cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                                           >  1:3263124/1‑91 (MQ=255)

                                                 cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa                                           <  1:1943504/91‑1 (MQ=255)

                                                   AAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACg                                         <  1:510941‑M1/91‑1 (MQ=255)

                                                     atgccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGcc                                       >  2:4554678‑M2/38‑91 (MQ=255)

                                                     ATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGcc                                       <  1:1381744‑M1/91‑1 (MQ=255)

                                                     ATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGcc                                       >  1:1629486‑M1/1‑91 (MQ=255)

                                                       gccaactatacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCATCCTAATTTTAGccgcgat                                     >  1:4913241‑M2/36‑88 (MQ=255)

                                                       gCCAACGATGTCATCACTAGTTATAGTTGTCATTTTTCGTTTAGCTCATGTGTAACAAGCAATAACTGGTCACCCTAATTTTAGACGCCtt                                     <  2:5095543/91‑1 (MQ=255)

                                                         CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   <  1:4120729‑M1/91‑1 (MQ=255)

                                                         CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   <  2:1220003‑M1/91‑1 (MQ=255)

                                                         CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   <  2:4810242‑M1/91‑1 (MQ=255)

                                                         CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   <  2:3069032‑M1/91‑1 (MQ=255)

                                                         CAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttc                                   <  1:1011067‑M1/91‑1 (MQ=255)

                                                          AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                                  >  2:4945069‑M1/1‑91 (MQ=255)

                                                          AACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttca                                  <  1:228633‑M1/91‑1 (MQ=255)

                                                           ACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTttcat                                 <  2:1544348‑M1/91‑1 (MQ=255)

                                                             TATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTACTTTTAGACGCCTttcattc                               <  1:4506283‑M1/91‑1 (MQ=255)

                                                               tacctagggatgatatagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCag                             >  2:2166558‑M2/28‑91 (MQ=255)

                                                                 tcatcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggt                           >  1:154351/1‑91 (MQ=255)

                                                                  catcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATTTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggta                          >  2:1114528/1‑91 (MQ=255)

                                                                  catcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggta                          <  2:3140727/91‑1 (MQ=255)

                                                                   atcCCTAGGTATAGTTGGCATTTTTTTTTTTTTTTTTGTATAAAAAGCACTAACTGTTCACCCTAATTTTAGCGGCGTTTCATCCaggtcg                         >  2:275402/1‑89 (MQ=255)

                                                                   atcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTCACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtag                         >  2:5410921/1‑91 (MQ=255)

                                                                   atcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtag                         >  2:3504959/1‑91 (MQ=255)

                                                                   atcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtag                         >  1:1455599/1‑91 (MQ=255)

                                                                   atcCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTATCATTCaggtag                         >  2:3752744/1‑91 (MQ=255)

                                                                     cccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCaggtaggt                       >  2:4685167/1‑91 (MQ=255)

                                                                      ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc                      <  1:5024745/91‑1 (MQ=255)

                                                                      ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc                      <  2:4743536/91‑1 (MQ=255)

                                                                      ccTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTc                      <  1:5398516/91‑1 (MQ=255)

                                                                       cTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCt                     <  2:2316135/91‑1 (MQ=255)

                                                                       cTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCt                     <  2:3649194/91‑1 (MQ=255)

                                                                       cTAGGTATAGTTGGCATTTCTCGGTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCt                     <  2:2844654/91‑1 (MQ=255)

                                                                              tagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGaa              >  2:3293480‑M2/13‑91 (MQ=255)

                                                                              tagttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGaa              >  1:4978264‑M2/13‑91 (MQ=255)

                                                                               agttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGaaa             >  1:5613056‑M2/12‑91 (MQ=255)

                                                                                gttggcatttTTCGTCTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAAc            >  1:2828912‑M2/11‑91 (MQ=255)

                                                                                 ttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACt           <  1:179963‑M2/82‑1 (MQ=255)

                                                                                 ttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACt           >  1:529987‑M2/10‑91 (MQ=255)

                                                                                 ttggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACt           <  1:3781627‑M2/82‑1 (MQ=255)

                                                                                   ggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGa         <  2:1064050‑M2/84‑1 (MQ=255)

                                                                                   ggcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGa         <  2:239683‑M2/84‑1 (MQ=255)

                                                                                    gcatttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaa        <  1:3735860‑M2/85‑1 (MQ=255)

                                                                                      atttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaaaa      <  1:3581540‑M2/87‑1 (MQ=255)

                                                                                      atttTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGaaaa      >  2:43015‑M2/5‑91 (MQ=255)

                                                                                          ttCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACttt  <  1:856291/91‑1 (MQ=255)

AATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACGCCTTTCATTCAGGTAGGTCTTATTGAAACTGAAAACTTT  >  USA300TCH1516_ALE/2847679‑2847859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.