| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2847730 = | 219 (0.730) | 12 (0.050) | 10/132 | NT | 5.7% | intergenic (+39/+110) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 |
| ? | USA300TCH1516_ALE | 2847769 = | 219 (0.890) | intergenic (+78/+71) | yceI/USA300HOU_RS14590 | Protein YceI/Lactonase drp35 | |||||
Only 100 of 458 total aligned reads displayed.
AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACG > USA300TCH1516_ALE/2847640‑2847820 | gCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAA < 2:2740494‑M1/91‑1 (MQ=255) cAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAAT < 1:994507‑M1/91‑1 (MQ=255) aaaGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATG < 2:5705462‑M1/91‑1 (MQ=255) ttcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGc > 2:2596395‑M1/86‑91 (MQ=255) aaGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC < 1:5278819‑M1/91‑1 (MQ=255) aaGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC > 2:2108308‑M1/1‑91 (MQ=255) aaGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGC < 2:2462866‑M1/91‑1 (MQ=255) tcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGcc < 2:239683‑M1/7‑1 (MQ=255) tcagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGcc < 2:1064050‑M1/7‑1 (MQ=255) aGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCC < 2:4939875‑M1/91‑1 (MQ=255) gATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCA < 1:281828‑M1/91‑1 (MQ=255) cagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCa < 1:5424425‑M1/8‑1 (MQ=255) cagtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCa > 2:558802‑M1/84‑91 (MQ=255) tGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC > 1:5864417‑M1/1‑91 (MQ=255) tGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAAC < 1:4949400‑M1/91‑1 (MQ=255) gtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAACGGCCAAc < 1:4636659‑M1/10‑1 (MQ=255) gtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAAc > 1:1811924‑M1/82‑91 (MQ=255) gtttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAAc > 2:4300704‑M1/82‑91 (MQ=255) ttcaataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACta > 2:3293480‑M1/80‑91 (MQ=255) ttAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA > 2:5177675‑M1/1‑91 (MQ=255) ttAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTA < 1:5322709‑M1/91‑1 (MQ=255) caataagacctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACtata > 2:4615835‑M1/78‑91 (MQ=255) aaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTatat > 1:169178/1‑91 (MQ=255) aaTTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTatat < 1:916889/91‑1 (MQ=255) aaGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATccc < 2:1918839/91‑1 (MQ=255) aaGCATCAGCTAAATTCTCAATCTCAGAATAATCTCATTACACAATCCTAATTGTTTTAATATATATACGAAATGCCAATTATATCATccc > 2:5836476/1‑91 (MQ=255) gCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTa < 2:141715/91‑1 (MQ=255) ctacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTa > 1:2384685‑M1/69‑91 (MQ=255) tacctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacataagttaaaagaaAAATGCCAACTATATCATCCCTAg > 2:3257028‑M1/68‑91 (MQ=255) aTCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATAcctagggatga < 2:3656062‑M1/91‑12 (MQ=255) tCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGt < 1:2624775‑M2/91‑2 (MQ=255) ctgaatgaaaggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGta > 1:3095768‑M1/65‑91 (MQ=255) aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATAcctagggatgatat < 2:5489269‑M1/91‑15 (MQ=255) aGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtat < 2:144733‑M2/91‑4 (MQ=255) gCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtata < 2:1782652‑M2/91‑5 (MQ=255) cTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatag < 1:2484759‑M2/91‑6 (MQ=255) aggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCa > 1:5590633‑M1/56‑91 (MQ=255) ggcgtctaaaattagggtgaacagttagtgcttgttacacatgagttaaacgaaAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAt > 2:4554678‑M1/55‑91 (MQ=255) ctcAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcat > 1:3283068‑M2/1‑79 (MQ=255) cAATCTCAGAATAATCTCATTACACATTCCTCATTGTTTTAATATATATACTAAATGCCAACTATATCATCCCTAGGtatagttggcattg > 2:3009854‑M2/1‑77 (MQ=255) cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt > 2:2889356‑M2/1‑77 (MQ=255) cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt < 2:3962362‑M2/91‑15 (MQ=255) cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt < 2:635080‑M2/91‑15 (MQ=255) cAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGtatagttggcattt < 1:3155804‑M2/91‑15 (MQ=255) cAATCTCACAATAATCTTATTACACAATCCTCATAGTTTGAATATATATACGAAATGCCAACTATATCATCCCTACGtatagttggcattt > 2:3085076‑M2/1‑77 (MQ=255) aTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttttt < 2:4185543/91‑1 (MQ=255) aTCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCAttttt > 2:4801661/1‑91 (MQ=255) tctcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTc < 1:5053556/91‑1 (MQ=255) tctcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTc < 1:3962152/91‑1 (MQ=255) tcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGt < 1:1014119/91‑1 (MQ=255) tcAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGt < 2:4058321/91‑1 (MQ=255) aGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGttt < 1:2726853/91‑1 (MQ=255) gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa > 2:629995/1‑91 (MQ=255) gAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTa < 1:20574/91‑1 (MQ=255) aataatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATAcctagggatgatatagttggcatttcgtatatat < 1:766430‑M1/91‑35 (MQ=255) taatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATCTTTCGTTTAACt > 2:3756912/1‑91 (MQ=255) aatCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTc > 1:2264727/1‑91 (MQ=255) atCTCATTACACAAACATCATTGTTTTAATATATATACGAAATGCCAACTATATCATCACTCGGTATAGTTGGCATTTTCCGTTTATCTCa > 2:1506387/1‑91 (MQ=255) tctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt < 2:3546586/91‑1 (MQ=255) tctcATTACACAATCCTCATTGCTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAt > 2:4463323/1‑91 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:3737166/91‑1 (MQ=255) ctcATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtg < 1:1563688/91‑1 (MQ=255) cATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCAtgtg < 2:1472958/91‑1 (MQ=255) acacAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAAc < 2:2320523/91‑1 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 2:1183190/1‑91 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 1:5018510/1‑91 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 1:1980340/1‑91 (MQ=255) acaATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACaa > 2:3158918/1‑91 (MQ=255) acaATCCTCATGGTGTTAATATATATACGAAATGCCAACTATAcctagggatgatatagttgggatttcgtatatatattaaaacaatgag < 2:2199893‑M1/91‑49 (MQ=255) aaTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGc < 2:1617227/91‑1 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa > 1:5702917/1‑91 (MQ=255) aTCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCa > 2:3489942/1‑91 (MQ=255) tCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCAc < 2:754011/91‑1 (MQ=255) ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt < 1:1120084/91‑1 (MQ=255) ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt > 1:3563884/1‑91 (MQ=255) ccTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACt < 1:4154589/91‑1 (MQ=255) cTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTa > 1:2850360/1‑91 (MQ=255) cATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAAc > 1:3389703/1‑91 (MQ=255) tGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGt > 1:1443885/1‑91 (MQ=255) ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCTTTTAACTCATGTGTAACAAGCACTAACTGTTCAc > 2:2565101/1‑91 (MQ=255) ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc < 2:947109/91‑1 (MQ=255) ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc < 1:1337001/91‑1 (MQ=255) ttAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc > 1:4834015/1‑91 (MQ=255) ttAATATATATACGAAACGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAc > 1:4452431/1‑91 (MQ=255) tAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc < 2:497083/91‑1 (MQ=255) tAATATATATACGAAAAGCCAACTATAGCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAcc < 2:2066034/91‑1 (MQ=255) aaTATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCAccc < 1:1782652/91‑1 (MQ=255) tatatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTa > 1:5194075/1‑91 (MQ=255) atatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTaa > 1:1482490/1‑91 (MQ=255) tatataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAt < 1:728521/91‑1 (MQ=255) atataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtt > 2:472562/1‑91 (MQ=255) atataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAtt > 2:5023791/1‑91 (MQ=255) tataCGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAAttt < 1:220018/91‑1 (MQ=255) cGAAGTGCCAACTATACCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa < 2:4394436/91‑1 (MQ=255) cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa < 1:4275688/91‑1 (MQ=255) cGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGa > 1:4690438/1‑91 (MQ=255) aaaTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattg > 1:3875257‑M1/1‑14 (MQ=255) aaaTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattg > 1:3637356‑M1/1‑14 (MQ=255) aaaTGCCAACTATAcctagggatgatatagttggcatttcgtatatatattaaaacaatgaggattgtgtaatgagattattctgagattg > 1:579966‑M1/1‑14 (MQ=255) AAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACg < 2:5284146‑M1/91‑1 (MQ=255) | AGGCAAAGATGTTAAATTCGAAGCATCAGCTGAATTCTCAATCTCAGAATAATCTCATTACACAATCCTCATTGTTTTAATATATATACGAAATGCCAACTATATCATCCCTAGGTATAGTTGGCATTTTTCGTTTAACTCATGTGTAACAAGCACTAACTGTTCACCCTAATTTTAGACG > USA300TCH1516_ALE/2847640‑2847820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |