| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1805311 | 263 (0.880) | 13 (0.050) | 10/144 | NT | 5.1% | intergenic (‑599/+42) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase |
| ? | USA300TCH1516_ALE | = 1805338 | 251 (0.940) | intergenic (‑626/+15) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase | |||||
TAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1805214‑1805311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacgTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTGT < USA300TCH1516_ALE/1805338‑1805250 TAAAAGATATAAACATTTATATAGATTGCCATTTATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATAAACCA > 1:5818694/1‑91TAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCA > 1:1358048/1‑91TAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCA > 1:1583536/1‑91TAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCA > 2:899826/1‑91 AAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAATATACCAGATGAACCAA > 2:1676750/1‑91 AAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAA < 2:5813639/91‑1 aaaATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATAACAAATAAAACAAAA < 2:1477991/88‑1 AAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAA < 2:1599964/91‑1 AAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAA > 2:3042398/1‑91 AAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAA < 2:2865334/91‑1 AAGATATAAACATTTATATAGATAGCCATTCATACACTATCATTATCAATTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAA > 1:1967042/1‑91 AGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAA > 2:5105717/1‑91 AGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAA > 2:4730999/1‑91 ATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAC > 1:2055644/1‑91 ATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAC < 1:2285282/91‑1 ATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAC > 1:4779669/1‑91 ATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAAC < 2:2605375/91‑1 TATAAACATTTATATAGATTGCCATTCATACACTATCATTCTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACG > 1:4885717/1‑91 TATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACG > 2:5014003/1‑91 ATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTTATCAAC < 2:4200876/91‑1 ATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTTATCAAC < 1:2688668/91‑1 TGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAA < 2:102444/91‑1 CCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGAAAAAAAAAAAAACGTCTTTCCATTTATCAACAATG < 2:3738864/91‑1 TTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAA < 1:181557/91‑1 TCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAA < 1:2600272/91‑1 TACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGC < 1:3822877/91‑1 TACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGC < 1:5518394/91‑1 ACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCG < 2:1972002/91‑1 CACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGT > 1:957730/1‑91 ACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTT < 1:4102781/91‑1 CTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTT < 1:2475852/91‑1 CTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTT < 1:2475806/91‑1 AAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGA > 1:1386228/1‑91 AAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGA < 1:1827164/91‑1 AAAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGA > 1:3321386/1‑91 AAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGAT < 1:5142531/91‑1 AAAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGAT > 2:2123814/1‑91 AAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATA < 2:1662261/91‑1 AAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATA > 1:4730999/1‑91 AAAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATA > 2:5830412/1‑91 AAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAG < 1:1774566/91‑1 AAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAG > 2:3424420/1‑91 AAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAG < 1:3092620/91‑1 AAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAG < 1:4046801/91‑1 AAACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAG > 2:1821024/1‑91 AACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGT > 1:3036157/1‑91 AACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGT > 1:2583024/1‑91 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 1:2952992/91‑1 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 1:2739257/91‑1 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG > 1:2434856/1‑91 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 2:5500152/91‑1 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 2:571400/91‑1 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 2:634001/91‑1 ACGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTG < 1:5404082/91‑1 CGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTGT > 1:3802544/1‑91 CGTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTGT > 2:5043304/1‑91 CGTCTTTCCATTTATCAACAATAGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTGT > 2:4467500/1‑91 TAAAAGATATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1805214‑1805311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacgTCTTTCCATTTATCAACAATGGAAAGGCGTTTTTTGGTTCATCTGGTATTTTATGACGTAATTAATAGGTTATTTGATAATGATAGTGT < USA300TCH1516_ALE/1805338‑1805250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |