| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1805311 | 263 (0.880) | 13 (0.050) | 10/144 | NT | 5.1% | intergenic (‑599/+42) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase |
| ? | USA300TCH1516_ALE | = 1805338 | 251 (0.940) | intergenic (‑626/+15) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase | |||||
Only 100 of 380 total aligned reads displayed.
TATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCA > USA300TCH1516_ALE/1805221‑1805401 | taAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGcc > 1:487473/1‑91 (MQ=255) taAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGcc < 1:164588/91‑1 (MQ=255) taAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGcc > 2:1853710/1‑91 (MQ=255) taAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGcc < 1:3072735/91‑1 (MQ=255) aaaCATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCt > 1:281370/1‑91 (MQ=255) aaCATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCtt < 2:4083490/91‑1 (MQ=255) aCATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATGAAATACCAGATGAACCAAAAAACGCCttt > 1:5176694/1‑91 (MQ=255) aCATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCttt > 2:4985025/1‑91 (MQ=255) aTTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTcc > 1:1911339/1‑91 (MQ=255) aTTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTcc < 2:4533847/91‑1 (MQ=255) tttATATAGATTGCCATTCATACACTATCATTATAAAATAACCTATTAATTACGTCATAAAATAAAAAAAAAAAAAAAAAACGCCTTTCCa < 2:3597975/91‑1 (MQ=255) ttATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAt < 1:1501445/91‑1 (MQ=255) tatataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAtt < 1:462078/91‑1 (MQ=255) tatataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAtt > 1:658377/1‑91 (MQ=255) atataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAttg < 2:2810395/91‑1 (MQ=255) ataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAttgtt > 1:288985/1‑91 (MQ=255) ataGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCAttgtt > 1:3834994/1‑91 (MQ=255) aGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGa < 1:1009692/91‑1 (MQ=255) gATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATATCAGATGAACCAAAAAACGCCTTTCCATTGTTGAt < 2:3495172/91‑1 (MQ=255) gATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGAt > 2:1171772/1‑91 (MQ=255) ttGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATaa > 2:2082461/1‑91 (MQ=255) tGCGATTCATACACTATCATTATCAAATAACCTGTGAATTACGTCATAAAATACGAGATGAACGAAAAAACGCGTTTGCATTGTTGATaaa < 2:5718418/91‑1 (MQ=255) tGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGtctttccatttatcaacaa < 2:102444‑M1/91‑20 (MQ=255) gCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAAt > 1:5799870/1‑91 (MQ=255) ccATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATg > 1:3031332/1‑91 (MQ=255) aTTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGa > 2:2615047/1‑91 (MQ=255) aTTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGa > 1:347511/1‑91 (MQ=255) ttCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGtctttccatttatcaacaatggaa < 1:181557‑M1/91‑25 (MQ=255) ttCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGaa > 1:3743980/1‑91 (MQ=255) acacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcg > 1:3802544‑M2/1‑89 (MQ=255) acacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcg > 2:5043304‑M2/1‑89 (MQ=255) cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgt < 1:2739257‑M2/91‑4 (MQ=255) cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgt < 2:5500152‑M2/91‑4 (MQ=255) cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgt < 2:634001‑M2/91‑4 (MQ=255) cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgt < 1:2952992‑M2/91‑4 (MQ=255) acTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGtctttccatttatcaacaatggaaaggcgtt < 1:4102781‑M1/91‑32 (MQ=255) cTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgttt > 2:1821024‑M2/1‑86 (MQ=255) cTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgttt < 1:3092620‑M2/91‑6 (MQ=255) tATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgtttt > 2:5830412‑M2/1‑85 (MQ=255) cATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGttttttt < 1:4922864/91‑1 (MQ=255) cATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGttttttt > 2:297678/1‑91 (MQ=255) aTTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTta < 1:2105805/91‑1 (MQ=255) ttATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat < 1:4578622/91‑1 (MQ=255) ttATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat > 1:3167673/1‑91 (MQ=255) tATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtata > 1:2073578/1‑91 (MQ=255) aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaa < 2:1334235/91‑1 (MQ=255) aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaa > 2:3335526/1‑91 (MQ=255) tCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaaa < 2:3758941/91‑1 (MQ=255) tCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaaa > 1:4207056/1‑91 (MQ=255) aaaTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAAtt > 2:164437/1‑91 (MQ=255) aTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATtat < 2:4729731/91‑1 (MQ=255) aTAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATtat < 2:5461501/91‑1 (MQ=255) aaCCTATTAATTACGTCATACAATACCAGATGAACGAAAAAACGCCTTTCCATTGTTGATAAATGTAAAGACGTTTTTTTATAAATtattg < 2:4891790/91‑3 (MQ=255) aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg < 1:2676507/91‑1 (MQ=255) aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg < 2:4351453/91‑1 (MQ=255) aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg < 2:1271354/91‑1 (MQ=255) aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg < 2:2221194/91‑1 (MQ=255) ttaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGtt > 1:4345538/1‑91 (MQ=255) ttaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGtt > 1:1713860/1‑91 (MQ=255) aattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTg < 2:4373679/91‑1 (MQ=255) attaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGc < 2:2293934/91‑1 (MQ=255) attaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGc < 1:5507685/91‑1 (MQ=255) attaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGc < 1:4753012/91‑1 (MQ=255) aCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCata < 1:3580161/91‑1 (MQ=255) cATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCt < 1:1285669/91‑1 (MQ=255) aTAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCtt < 2:196665/91‑1 (MQ=255) aaaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa > 2:3691968/1‑91 (MQ=255) aaaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa < 1:1119647/91‑1 (MQ=255) aaaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa < 1:2208091/91‑1 (MQ=255) aaaTACCAGATGTACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCaa < 2:3883975/91‑1 (MQ=255) aTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAg < 1:2554220/91‑1 (MQ=255) ccAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAtt > 2:1980156/1‑91 (MQ=255) ccAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAtt > 2:4682156/1‑91 (MQ=255) cAGATGAACCAAAAAACGCCTTTCCATTTTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt < 2:739240/91‑1 (MQ=255) cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt < 2:876570/91‑1 (MQ=255) cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt < 2:5818649/91‑1 (MQ=255) gATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTa > 2:559616/1‑91 (MQ=255) tGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTAcc < 1:768728/91‑1 (MQ=255) tGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTAcc < 2:4773860/91‑1 (MQ=255) gAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCt < 1:4444275/91‑1 (MQ=255) aCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg > 2:570949/1‑91 (MQ=255) aCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg > 1:3454683/1‑91 (MQ=255) aaaaaaCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatga > 1:1386228‑M1/1‑8 (MQ=255) aaaaaaCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatga > 1:3321386‑M1/1‑8 (MQ=255) aaaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc < 2:2426831/91‑1 (MQ=255) aaaaaaCGCCTTTCCATTGTTGAAAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc > 1:184308/1‑91 (MQ=255) aaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagcag < 1:5014003/91‑1 (MQ=255) aaaCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatag < 1:4046801‑M1/91‑87 (MQ=255) aaaCGCCTTTCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatag < 1:2475806‑M2/91‑60 (MQ=255) aaCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagt > 1:2583024‑M1/1‑4 (MQ=255) aaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca < 2:3236406/91‑1 (MQ=255) aaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca < 2:1675687/91‑1 (MQ=255) aCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtg < 1:5404082‑M1/91‑89 (MQ=255) aCGtctttccatttatcaacaatggaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtg > 1:2434856‑M1/1‑3 (MQ=255) aCGCCTTTCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtg > 1:957730‑M2/1‑30 (MQ=255) aCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCAt > 1:528219/1‑91 (MQ=255) aCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCAt > 2:2504393/1‑91 (MQ=255) cGtctttccatttatcaacaatagaaaggcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtgt > 2:4467500‑M1/1‑2 (MQ=255) cGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATc < 2:2159093/91‑1 (MQ=255) gCCTTTCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtgta < 1:5518394‑M2/91‑64 (MQ=255) | TATAAACATTTATATAGATTGCCATTCATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCA > USA300TCH1516_ALE/1805221‑1805401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |