BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1805311	263 (0.880)	13 (0.050)	10/144	NT	5.1%	intergenic (‑599/+42)	USA300TCH1516_01684/pyk	hypothetical protein/Pyruvate kinase
*	?	USA300TCH1516_ALE	= 1805338	251 (0.940)	13 (0.050)	10/144	NT	5.1%	intergenic (‑626/+15)	USA300TCH1516_01684/pyk	hypothetical protein/Pyruvate kinase

Only 100 of 337 total aligned reads displayed.

ATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTAT  >  USA300TCH1516_ALE/1805248‑1805427

aTACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGa                                                                                           <  2:4682886/91‑1 (MQ=255)

  acacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCTATTGTTGATAAATGGAAAGAcg                                                                                         >  2:4467500‑M2/1‑89 (MQ=255)

   cacTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgt                                                                                        <  2:634001‑M2/91‑4 (MQ=255)

     cTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgttt                                                                                      >  2:3424420‑M2/1‑86 (MQ=255)

      tATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgtttt                                                                                     >  2:5830412‑M2/1‑85 (MQ=255)

      tATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgtttt                                                                                     <  2:1662261‑M2/91‑7 (MQ=255)

       aTCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgttttt                                                                                    <  1:5142531‑M2/91‑8 (MQ=255)

        tCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgtttttt                                                                                   <  1:1827164‑M2/91‑9 (MQ=255)

        tCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGAcgtttttt                                                                                   >  1:1386228‑M2/1‑83 (MQ=255)

         cATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGttttttt                                                                                  >  2:297678/1‑91 (MQ=255)

         cATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGttttttt                                                                                  >  1:4551782/1‑91 (MQ=255)

          aTTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTta                                                                                 <  1:2105805/91‑1 (MQ=255)

           ttATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat                                                                                >  1:2433034/1‑91 (MQ=255)

           ttATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtat                                                                                >  1:3456364/1‑91 (MQ=255)

            tATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtata                                                                               >  1:2073578/1‑91 (MQ=255)

            tATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTtata                                                                               >  2:5110337/1‑91 (MQ=255)

             aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaa                                                                              >  1:5380692/1‑91 (MQ=255)

             aTCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaa                                                                              <  2:1334235/91‑1 (MQ=255)

              tCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATaaa                                                                             >  1:4207056/1‑91 (MQ=255)

                    aaCCTATTAATTACGTCATACAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg                                                                       <  2:4891769/91‑1 (MQ=255)

                    aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg                                                                       <  2:2221194/91‑1 (MQ=255)

                    aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg                                                                       <  2:1271354/91‑1 (MQ=255)

                    aaCCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAg                                                                       <  1:408806/91‑1 (MQ=255)

                         attaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGt                                                                  >  1:1258570/1‑91 (MQ=255)

                         attaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGt                                                                  >  1:1684182/1‑91 (MQ=255)

                          ttaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGtt                                                                 >  2:4742131/1‑91 (MQ=255)

                          ttaattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGtt                                                                 <  1:1721996/91‑1 (MQ=255)

                            aattaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTg                                                               <  2:4387561/91‑1 (MQ=255)

                             attaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGc                                                              <  1:5507663/91‑1 (MQ=255)

                             attaCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGc                                                              <  1:4753012/91‑1 (MQ=255)

                               taCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCat                                                            <  1:4393198/91‑1 (MQ=255)

                               taCGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCat                                                            <  2:2357590/91‑1 (MQ=255)

                                aCGTCATAAAATACCAGATGAACCGAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCata                                                           <  1:5538672/91‑1 (MQ=255)

                                 cGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCatat                                                          >  1:3077343/1‑91 (MQ=255)

                                  gTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATc                                                         <  1:1538387/91‑1 (MQ=255)

                                   tCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATcc                                                        <  1:807684/91‑1 (MQ=255)

                                       agaaTACCAGATGAACCAAAAAACGCCTTGCTATTGTTGATAAATGGAAAGACGTTTTCTTATACATTATAGAACGTTTGCATAACCTGCa                                                    >  1:4906611/3‑91 (MQ=255)

                                       aaaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa                                                    <  2:3118401/91‑1 (MQ=255)

                                       aaaaTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa                                                    >  2:4959745/1‑91 (MQ=255)

                                        aaaTACCTGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCaa                                                   <  1:287251/91‑1 (MQ=255)

                                        aaaTACCAGATGTACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCaa                                                   <  2:3883975/91‑1 (MQ=255)

                                          aTACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAg                                                 <  1:2554220/91‑1 (MQ=255)

                                           tACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGa                                                >  2:4049275/1‑91 (MQ=255)

                                            aCCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAt                                               >  2:4359725/1‑91 (MQ=255)

                                             ccAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAtt                                              >  2:1980156/1‑91 (MQ=255)

                                              cAGATGAACCAAAAAACGCCTTTCCATTTTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt                                             <  2:739240/91‑1 (MQ=255)

                                              cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt                                             <  2:876570/91‑1 (MQ=255)

                                              cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt                                             <  2:2299985/91‑1 (MQ=255)

                                              cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt                                             <  1:5669939/91‑1 (MQ=255)

                                              cAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGAttt                                             <  2:5818649/91‑1 (MQ=255)

                                                gATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTa                                           >  2:559616/1‑91 (MQ=255)

                                                  tGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTAcc                                         >  2:4504337/1‑91 (MQ=255)

                                                   gAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCt                                        <  1:4985025/91‑1 (MQ=255)

                                                   gAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCt                                        <  1:4444275/91‑1 (MQ=255)

                                                   gAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCt                                        >  1:2759472/1‑91 (MQ=255)

                                                   gAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCt                                        <  2:2103248/91‑1 (MQ=255)

                                                    aaCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCtt                                       <  1:2181648/91‑1 (MQ=255)

                                                     aCCCAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg                                      <  2:1853192/91‑1 (MQ=255)

                                                     aCCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTg                                      >  2:570949/1‑91 (MQ=255)

                                                      ccAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGa                                     >  2:3774864/1‑91 (MQ=255)

                                                       cAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGag                                    >  2:2601190/1‑91 (MQ=255)

                                                        aaaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc                                   >  2:2430700/1‑91 (MQ=255)

                                                        aaaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc                                   >  1:1056274/1‑91 (MQ=255)

                                                        aaaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc                                   <  2:1774566/91‑1 (MQ=255)

                                                        aaaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagc                                   >  1:3967060/1‑91 (MQ=255)

                                                         aaaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGagca                                  <  1:2005716/91‑1 (MQ=255)

                                                          aaaaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCa                                                    <  2:5510918/72‑1 (MQ=255)

                                                           aaaCGCCTTTCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatag                                <  1:2475852‑M2/91‑60 (MQ=255)

                                                            aaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca                               >  1:3159169/1‑91 (MQ=255)

                                                            aaCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAgcagca                               <  2:3236406/91‑1 (MQ=255)

                                                             aCGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCAt                              >  2:2504393/1‑91 (MQ=255)

                                                              cGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATc                             <  2:2159093/91‑1 (MQ=255)

                                                               gCCTTTCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtgta                            <  1:3822877‑M2/91‑64 (MQ=255)

                                                                ccTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCaa                           >  1:2928469/1‑91 (MQ=255)

                                                                ccTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCaa                           >  1:3685331/1‑91 (MQ=255)

                                                                 cTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAAt                          >  2:4180664/1‑91 (MQ=255)

                                                                 cTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAAt                          <  1:1004284/91‑1 (MQ=255)

                                                                  tttCCATTGTTGATAAATGGAAAGAcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtgtatga                         <  1:2600272‑M2/91‑67 (MQ=255)

                                                                  tttCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATc                         <  2:2055644/91‑1 (MQ=255)

                                                                   ttCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCg                        >  2:3655237/1‑91 (MQ=255)

                                                                    tCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGt                       <  2:487473/91‑1 (MQ=255)

                                                                     ccATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGta                      <  2:1218493/91‑1 (MQ=255)

                                                                     ccATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGta                      >  1:4595255/1‑91 (MQ=255)

                                                                      cATTGTTGATAAATGGAAAGAcgtttttttttttttctggtattttatgacgtaattaataggttatttgataatgatagtgtatgaatgg                     <  2:3738864‑M2/91‑71 (MQ=255)

                                                                      cATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaa                     <  1:4642208/91‑1 (MQ=255)

                                                                       aTTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaac                    <  1:5080935/91‑1 (MQ=255)

                                                                          gttgATAAATGGAAAGGcgttttttggttcatctggtattttatgacgtaattaataggttatttgataatgatagtgtatgaatggcaat                 <  1:2688668‑M2/91‑75 (MQ=255)

                                                                          gttgATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGtaactaa                 <  1:1867839/91‑1 (MQ=255)

                                                                            tgATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACa               <  1:3042398/91‑1 (MQ=255)

                                                                            tgATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACa               <  1:3290464/91‑1 (MQ=255)

                                                                            tgATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACa               <  1:3335526/91‑1 (MQ=255)

                                                                              aTAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATg             >  1:965800/1‑91 (MQ=255)

                                                                                aaaTGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGtt           >  2:2779165/1‑91 (MQ=255)

                                                                                aaaTGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGtt           >  2:1050898/1‑91 (MQ=255)

                                                                                aaaTGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGtt           >  1:1124161/1‑91 (MQ=255)

                                                                                   tGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTAtt        <  2:1095202/91‑1 (MQ=255)

                                                                                    ggAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTg       >  1:694771/1‑91 (MQ=255)

                                                                                      aaaGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCt     <  2:2546624/91‑1 (MQ=255)

                                                                                        aGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTa   >  2:1510059/1‑91 (MQ=255)

                                                                                         gACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTAt  <  1:3611167/91‑1 (MQ=255)

ATACACTATCATTATCAAATAACCTATTAATTACGTCATAAAATACCAGATGAACCAAAAAACGCCTTTCCATTGTTGATAAATGGAAAGACGTTTTTTTATAAATTATAGTACGTTTGCATATCCTTCAAAGATTTTACCTTGAGCAGCATCAATCGTAACTAACATGTTATTGCTTAT  >  USA300TCH1516_ALE/1805248‑1805427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.