New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 62270 =311 (1.040)22 (0.070) 9/158 NT 6.4% coding (264/810 nt) USA300TCH1516_00053 hypothetical protein
?USA300TCH1516_ALE = 68157 341 (1.160)coding (273/852 nt) USA300TCH1516_00061 hypothetical protein

Only 100 of 405 total aligned reads displayed.

CGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTAAAGCG  >  USA300TCH1516_ALE/68067‑68247
                                                                                          |                                                                                          
cGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGcatcat                                                                                            >  1:4135777/1‑91 (MQ=34)
cGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGcatcat                                                                                            >  2:2631970/1‑91 (MQ=33)
cGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGcatcat                                                                                            >  2:3041704/1‑91 (MQ=34)
 ggTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATt                                                                                           >  2:5162232‑M2/1‑90 (MQ=255)
      tCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCATAAGCATCATTTGAAc                                                                                      >  1:1512246/1‑91 (MQ=21)
      tCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAAc                                                                                      >  1:4099247/1‑91 (MQ=34)
      tCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAAc                                                                                      >  1:4708019/1‑91 (MQ=34)
       cGTAAGATTACGGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACt                                                                                     >  2:5087701/1‑91 (MQ=18)
        gTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTg                                                                                    >  1:493458/1‑91 (MQ=34)
         tAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGc                                                                                   <  2:4952709/91‑1 (MQ=34)
         tAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGc                                                                                   <  1:3648257/91‑1 (MQ=34)
           aGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCg                                                                                 >  1:2785486/1‑91 (MQ=34)
             aTTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAg                                                                               <  1:5110443/91‑1 (MQ=34)
              ttACAGCATTGATTAATCAATGTTATACAACACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGt                                                                              <  1:2888951/91‑1 (MQ=18)
               tACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGtt                                                                             <  1:5283152/91‑1 (MQ=34)
                aCAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTa                                                                            <  1:4405282/91‑1 (MQ=34)
                 cAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAg                                                                           >  2:4124502/1‑91 (MQ=34)
                  aGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGa                                                                          <  1:5617706/91‑1 (MQ=34)
                  aGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGa                                                                          <  1:1664443/91‑1 (MQ=34)
                  aGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGa                                                                          >  2:5219131/1‑91 (MQ=34)
                    cATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGAcc                                                                        <  2:1019554/91‑1 (MQ=34)
                    cATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGAcc                                                                        <  2:3123217/91‑1 (MQ=34)
                     aTTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCt                                                                       >  1:5010854/1‑91 (MQ=34)
                      ttGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTa                                                                      <  1:865505/91‑1 (MQ=34)
                        gATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTaaa                                                                    <  1:4054405/91‑1 (MQ=34)
                         aTTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTaaaa                                                                   <  1:2374805/91‑1 (MQ=34)
                             aTCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGAt                                                               >  1:3976538/1‑91 (MQ=35)
                               cAATGTTATACATCTCCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTGGAACTGCCGAGTGAGACCTAAAAAGATGa                                                             <  1:5366481/91‑1 (MQ=255)
                               cAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAGCCATCATTTGAACTGCCGAGTTACACCTAAAAAGATGa                                                             >  1:4863567/1‑91 (MQ=255)
                               aaaTGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAAAtaa                                                             <  2:1571759/90‑3 (MQ=16)
                                aaTGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGAc                                                            >  1:1156736/1‑91 (MQ=39)
                                  tGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaa                                                          >  1:198516/1‑91 (MQ=39)
                                  tGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaa                                                          >  2:177350/1‑91 (MQ=38)
                                  tGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaa                                                          <  1:1928609/91‑1 (MQ=39)
                                  tGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaa                                                          >  1:217222/1‑91 (MQ=39)
                                   gTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaaa                                                         >  1:5747389/1‑91 (MQ=40)
                                    ttATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaaaa                                                        <  1:3716618/91‑1 (MQ=255)
                                    ttATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACaaaa                                                        >  2:1276864/1‑91 (MQ=255)
                                     tataCATCACCAATTAATCATAAGAGAGTACAGAGAGTGATGCTTCTGCATCACtctctgtactctcttatgattaattggtgatgtataa                                                       >  1:3434163‑M2/1‑54 (MQ=255)
                                      ataCATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAAt                                                      >  2:4370136/1‑91 (MQ=255)
                                      ataCATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAAt                                                      >  1:1274797/1‑91 (MQ=255)
                                        aCATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAg                                                    <  1:2967714/91‑1 (MQ=40)
                                        aCATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAg                                                    <  2:577429/91‑1 (MQ=255)
                                             aCCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTaaa                                               >  1:3013005/1‑91 (MQ=255)
                                             aCCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTaaa                                               >  1:1436012/1‑91 (MQ=255)
                                             aCCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTaaa                                               >  1:1399984/1‑91 (MQ=255)
                                               cAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAAcc                                             >  1:712450/1‑91 (MQ=255)
                                                aaTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCg                                            >  2:1217644/1‑91 (MQ=255)
                                                 aTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGt                                           <  2:3597615/91‑1 (MQ=255)
                                                 aTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGt                                           <  1:1025348/91‑1 (MQ=255)
                                                 aTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGt                                           >  1:3161990/1‑91 (MQ=255)
                                                 aTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAAAAAAAAAAAATAGGTAAACCGt                                           <  2:2969912/91‑1 (MQ=14)
                                                  ttAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGta                                          <  2:2430080/91‑1 (MQ=255)
                                                   tAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtat                                         >  1:5434453/1‑91 (MQ=255)
                                                   tAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtat                                         >  1:4291041/1‑91 (MQ=255)
                                                   tAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtat                                         >  2:4286060/1‑91 (MQ=255)
                                                   tAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtat                                         <  2:1148541/91‑1 (MQ=255)
                                                    aaTCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtatt                                        >  1:1591973/1‑91 (MQ=255)
                                                    aaTCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtatt                                        >  2:2850463/1‑91 (MQ=255)
                                                     aTCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtatta                                       <  1:3503812/91‑1 (MQ=255)
                                                     aTCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtatta                                       <  2:217222/91‑1 (MQ=255)
                                                      tCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtattat                                      >  2:3972443/1‑91 (MQ=255)
                                                      tCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGtattat                                      >  2:3891480/1‑91 (MQ=40)
                                                       cATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATtata                                     >  1:2551825/1‑91 (MQ=255)
                                                         tAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATaaa                                   >  1:2236746/1‑91 (MQ=255)
                                                          aaGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATaaaa                                  >  2:1106091/1‑91 (MQ=255)
                                                             agagTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACgg                               >  2:3732377/1‑91 (MQ=255)
                                                             agagTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACgg                               <  1:3060104/91‑1 (MQ=255)
                                                              gagTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGa                              >  2:3458642/1‑91 (MQ=255)
                                                              gagTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATAACAAAAATAGGTAAACCGTATTATAAAACGGa                              <  2:4076022/91‑1 (MQ=255)
                                                               agTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGAc                             <  1:3257306/91‑1 (MQ=255)
                                                               agTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGAc                             <  1:51842/91‑1 (MQ=255)
                                                               agTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATCACAAAAATAGGTAAACCGTATTATAAAACGGAc                             <  1:5841130/91‑1 (MQ=255)
                                                                 tACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACaa                           >  2:5537512/1‑91 (MQ=255)
                                                                 tACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCAAAAAAGAAGACAAAAATAGGTAAACCGTATTATAAAACGGACaa                           <  2:2269149/91‑1 (MQ=255)
                                                                     gagaATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATtta                       >  1:3889880/1‑91 (MQ=255)
                                                                      agaATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATttat                      >  2:1400945/1‑91 (MQ=255)
                                                                       aaaTGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAATATGAAAAAAATAGGTAAACCGTATTATAAAACGGACAATttatt                     <  2:5690419/90‑1 (MQ=255)
                                                                        aaTGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATttatta                    <  2:1976441/91‑1 (MQ=255)
                                                                           gatgCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACaa                 <  1:1124216/91‑1 (MQ=38)
                                                                           gatgCAGAAGCATCATTTGAACTGCCGAGTGAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACaa                 <  1:4526337/91‑1 (MQ=255)
                                                                            atgCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACaaa                >  2:3341966/1‑91 (MQ=39)
                                                                            atgCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACaaa                <  2:1638297/91‑1 (MQ=39)
                                                                            atgCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACaaa                >  2:1913331/1‑91 (MQ=38)
                                                                             tgCAGAAGCATCATtctctgtactctcttatgattaattggtgatgtataacattgattaatcaatgctgtaatcttacgataaccgtagg               <  2:5066136‑M2/91‑78 (MQ=255)
                                                                              gCAGAAGCATCATtctctgtactctcttatgattaattggtgatgtataacattgattaatcaatgctgtaatcttacgataaccgtaggt              <  2:3706203‑M2/91‑79 (MQ=255)
                                                                                ttctgCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACa            >  2:3243056/5‑91 (MQ=255)
                                                                                 gAAGCATCATtctctgtactctcttatgattaattggtgatgtataacattgattaatcaatgctgtaatcttacgataaccgtaggtata           <  2:2720812‑M2/91‑82 (MQ=255)
                                                                                 gAAGCATCATtctctgtactctcttatgattaattggtgatgtataacattgattaatcaatgctgtaatcttacgataaccgtaggtata           <  1:2608864‑M2/91‑82 (MQ=255)
                                                                                   aGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACaaat         >  2:781861/1‑89 (MQ=255)
                                                                                   aGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAAtt         <  1:3371427/91‑1 (MQ=39)
                                                                                   aGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAAtt         >  1:2028020/1‑91 (MQ=39)
                                                                                   aGCATCATTTGAACTGCCGAGTTAGACCTAAAAAAATGAAAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAAtt         <  2:4726826/91‑1 (MQ=255)
                                                                                    gCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAAttt        >  2:1364996/1‑91 (MQ=39)
                                                                                     catcatTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTa       <  2:5325400/91‑1 (MQ=39)
                                                                                       tcatTTGAACTGCCGAGTTAGATCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTaaa     >  2:683273/1‑91 (MQ=255)
                                                                                       tcatTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTaaa     >  1:929944/1‑91 (MQ=39)
                                                                                       tcatTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTaaa     >  1:1350679/1‑91 (MQ=39)
                                                                                        catTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTAAAg    >  2:4602242/1‑91 (MQ=39)
                                                                                        catTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTAAAg    >  1:5218579/1‑91 (MQ=39)
                                                                                          |                                                                                          
CGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTTGAACTGCCGAGTTAGACCTAAAAAGATGACAAAAATAGGTAAACCGTATTATAAAACGGACAATTTATTACAAAGACAATTTAAAGCG  >  USA300TCH1516_ALE/68067‑68247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.