| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 62270 = | 311 (1.040) | 22 (0.070) | 9/158 | NT | 6.4% | coding (264/810 nt) | USA300TCH1516_00053 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 68157 | 341 (1.160) | coding (273/852 nt) | USA300TCH1516_00061 | hypothetical protein | |||||
TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/62360‑62270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATGATGCTTCTGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCTGTAATCTTACGATAACC < USA300TCH1516_ALE/68157‑68068 TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA > 1:123348/1‑91TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA > 1:2015433/1‑91TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA < 1:911572/91‑1TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA < 1:4833658/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 2:2720812/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 2:1174487/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 1:2952015/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 1:2813511/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 1:2608864/91‑1 TATACCTACGGTTATCGTAAGATTACAGCATTCATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 1:5742022/91‑1 TATACCGACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTC < 1:2254368/91‑1 TACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAGTGATGCTTCTG < 2:1126200/91‑1 TACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTG < 1:3928149/91‑1 TACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTG < 1:5847394/91‑1 TACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTG < 1:2552432/91‑1 ACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGC < 2:3706203/91‑1 ACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGC < 1:91947/91‑1 CCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGCA < 2:5285419/91‑1 CCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGCA < 2:5066136/91‑1 CCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGCA < 1:1417441/91‑1 CTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACGTCACCAATTAATCATAAGAGAGTACAGAGAGTGATGCTTCTGCAT < 2:5653683/91‑1 GGTGATCGTAAGATTACAGCATTGATGAGGCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGAATGATGCTTCTGCATCATT < 2:371638/91‑1 TGTTATACATCACCACTTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTA > 2:582246/1‑91 TTATACATCACCAATTAATCATAAGAGAGTACAGAGAGTGATGCAGAAGCATCACTCTCTGTACTCTCTTATGATTAATTGGTGATGTATA > 1:3434163/1‑91 TTAATCATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCA > 2:1647108/1‑91 CATAAGAGAGTACAGAGAATGATGCAGAAGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCT > 1:4248339/1‑91 AATGATGCTTCTGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCTGTAATCTTACGATAACC > 2:5162232/1‑91 AATGATGCTTCTGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCTGTAATCTTACGATAACC > 2:5199543/1‑91 AATGATGCTTCTGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCTGTAATCTTACGATAACC < 1:3399116/91‑1 TGGTAAACAATATACCTACGGTTATCGTAAGATTACAGCATTGATTAATCAATGTTATACATCACCAATTAATCATAAGAGAGTACAGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/62360‑62270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aATGATGCTTCTGCATCATTCTCTGTACTCTCTTATGATTAATTGGTGATGTATAACATTGATTAATCAATGCTGTAATCTTACGATAACC < USA300TCH1516_ALE/68157‑68068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |