BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2088022 =	203 (0.680)	14 (0.060)	7/126	NT	7.6%	intergenic (+39/+56)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	2088070 =	179 (0.760)	14 (0.060)	7/126	NT	7.6%	intergenic (+87/+8)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 343 total aligned reads displayed.

CTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTC  >  USA300TCH1516_ALE/2087980‑2088160

cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat                                                                                            <  1:3552592/91‑1 (MQ=255)

cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat                                                                                            <  2:5142455/91‑1 (MQ=255)

cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat                                                                                            <  1:1559643/91‑1 (MQ=255)

  aaTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCt                                                                                          >  2:2084131/1‑91 (MQ=255)

   aTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTa                                                                                         <  2:1602158/91‑1 (MQ=255)

   aTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTa                                                                                         <  2:531302/91‑1 (MQ=255)

    tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa                                                                                        >  1:1337781/1‑91 (MQ=255)

    tagtagTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTaa                                                                                        >  1:1839425/1‑91 (MQ=255)

     agtagtTACATAAATTAAAAGGTAGATATGTCTTTTTTATATAAAGGTTTGTCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAt                                                                                       <  2:4086614/91‑1 (MQ=255)

      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                                      >  2:5200025/1‑91 (MQ=255)

      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                                      <  1:2136987/91‑1 (MQ=255)

        agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt                                                                                    >  1:2702032/1‑91 (MQ=255)

         gtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATc                                                                                   <  1:5709738/91‑1 (MQ=255)

          ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa                                                                                  >  1:5412986/1‑91 (MQ=255)

          ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa                                                                                  <  2:4036523/91‑1 (MQ=255)

          ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa                                                                                  <  2:424017/91‑1 (MQ=255)

             cATAAATTAAAAGGTAGATATTTCTTTTTTATATCAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc                                                                               >  2:4868498/1‑91 (MQ=255)

             cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc                                                                               <  1:2088375/91‑1 (MQ=255)

                 aaTTAAAAGGTAGATATTGCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATGATCAAACTGCa                                                                           <  2:5825787/91‑1 (MQ=255)

                  aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                                          <  2:512209/91‑1 (MQ=255)

                   ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACt                                                                         <  1:2778116/91‑1 (MQ=255)

                     aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                                       >  2:2649985/1‑91 (MQ=255)

                      aaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaaa                                                                      >  2:929111/1‑91 (MQ=255)

                      aaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaaa                                                                      >  2:1044201/1‑91 (MQ=255)

                      aaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaaa                                                                      >  1:2197815/1‑91 (MQ=255)

                       aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                                     <  2:5007210/91‑1 (MQ=255)

                       aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                                     >  2:340229/1‑91 (MQ=255)

                        aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt                                                                    <  1:4146324/91‑1 (MQ=255)

                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                                   >  1:2631286/1‑91 (MQ=255)

                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                                   <  1:1744340/91‑1 (MQ=255)

                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                                   >  1:3329603/1‑91 (MQ=255)

                         ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                                   <  1:325359/91‑1 (MQ=255)

                          gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                                                  >  1:5300266/1‑91 (MQ=255)

                          gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                                                  <  2:3534142/91‑1 (MQ=255)

                            aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                                                >  1:3394514/1‑91 (MQ=255)

                            aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                                                <  1:347826/91‑1 (MQ=255)

                             gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa                                                               >  1:1009667/1‑91 (MQ=255)

                             gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa                                                               >  2:4433715/1‑91 (MQ=255)

                               tatTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaa                                                             >  1:2999857/1‑91 (MQ=255)

                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                                            <  2:895834/91‑1 (MQ=255)

                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                                            <  1:3746247/91‑1 (MQ=255)

                                atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                                            >  2:453774/1‑91 (MQ=255)

                                  ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                                          <  1:4379815/91‑1 (MQ=255)

                                  ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                                          <  2:2859526/91‑1 (MQ=255)

                                  ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                                          <  2:2903030/91‑1 (MQ=255)

                                   tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                                         >  2:2500108/1‑91 (MQ=255)

                                   tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                                         >  1:722536/1‑91 (MQ=255)

                                   tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                                         >  1:5217920/1‑91 (MQ=255)

                                       ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa                                                     >  1:823420/1‑91 (MQ=255)

                                         ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                                   >  2:3483114/1‑91 (MQ=255)

                                         ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                                   <  2:5461904/91‑1 (MQ=255)

                                           ATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                                                 <  1:4990517‑M1/91‑1 (MQ=255)

                                            TATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTa                                                >  1:3370710‑M1/1‑91 (MQ=255)

                                            TATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTa                                                <  2:1545476‑M1/91‑1 (MQ=255)

                                             ATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAt                                               >  1:3768315‑M1/1‑91 (MQ=255)

                                              TAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt                                              <  1:685416‑M1/91‑1 (MQ=255)

                                                  GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCATAACTGCTTATTCTATTACCt                                          >  1:5346586‑M1/1‑91 (MQ=255)

                                                  GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt                                          <  2:1735210‑M1/91‑1 (MQ=255)

                                                  GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt                                          >  1:4728451‑M1/1‑91 (MQ=255)

                                                  GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt                                          <  1:3054609‑M1/91‑1 (MQ=255)

                                                   GTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTg                                         >  1:891516‑M1/1‑91 (MQ=255)

                                                    TTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                                        >  1:3842526‑M1/1‑91 (MQ=255)

                                                      TGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                                      <  1:2464890‑M1/91‑1 (MQ=255)

                                                      TGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                                      <  1:2231850‑M1/91‑1 (MQ=255)

                                                         CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                   >  1:109294‑M1/1‑91 (MQ=255)

                                                         CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                   >  2:2378102‑M1/1‑91 (MQ=255)

                                                         CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                   >  2:455539‑M1/1‑91 (MQ=255)

                                                         CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                   >  2:2197815‑M1/1‑91 (MQ=255)

                                                         CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                                   >  1:343020‑M1/1‑91 (MQ=255)

                                                          AGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTc                                  <  2:2574451‑M1/91‑1 (MQ=255)

                                                          AGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTc                                  <  2:3135165‑M1/91‑1 (MQ=255)

                                                           agttatgaaatgtctgccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCt                                 >  2:3860317‑M2/32‑91 (MQ=255)

                                                            gttatgaaatgtctgccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTa                                >  1:5328812‑M2/31‑91 (MQ=255)

                                                            aCATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTa                                >  2:1111555/1‑91 (MQ=255)

                                                                ttCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctc                            <  1:4192419/91‑1 (MQ=255)

                                                                 tCATAACTTGCCAGACCTTTATATATCTAAGTATCAAACTGCACTAAAGTTACCAAAACTGCTTATTCTATTACCTGCCTTGTATACctct                           >  1:4660510/1‑91 (MQ=37)

                                                                 tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct                           <  1:1493767/91‑1 (MQ=255)

                                                                 tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct                           >  1:119472/1‑91 (MQ=255)

                                                                 tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctcc                           >  2:2989022/1‑90 (MQ=255)

                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc                     >  1:1232508/1‑91 (MQ=255)

                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc                     >  1:1029347/1‑91 (MQ=255)

                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc                     >  1:3958601/1‑91 (MQ=255)

                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc                     >  2:1825733/1‑91 (MQ=255)

                                                                       cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc                     >  2:2753650/1‑91 (MQ=255)

                                                                         tgccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGc                   <  1:2814139‑M2/74‑1 (MQ=255)

                                                                         tgccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGc                   >  2:2337892‑M2/18‑91 (MQ=255)

                                                                          gccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCt                  >  1:5660388‑M2/17‑91 (MQ=255)

                                                                           ccaaacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCta                 <  2:1239769‑M2/76‑1 (MQ=255)

                                                                              aacctttatataTCTGATTATCTAACAGCACTAAACTTACCAAAAGTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtatat              <  2:5761863‑M2/79‑1 (MQ=255)

                                                                              aacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtatat              <  2:5350306‑M2/79‑1 (MQ=255)

                                                                              aacctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtatat              <  1:3877946‑M2/79‑1 (MQ=255)

                                                                               acctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCtatata             >  2:5639476‑M2/12‑91 (MQ=255)

                                                                                cctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATaa            <  1:5466738‑M2/81‑1 (MQ=255)

                                                                                 ctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAac           <  2:619785‑M2/82‑1 (MQ=255)

                                                                                 ctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAac           <  2:759643‑M2/82‑1 (MQ=255)

                                                                                 ctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAac           <  1:4924966‑M2/82‑1 (MQ=255)

                                                                                 ctttatataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGACTTGTCTACCTCTCCTGTCGCTATATAac           >  1:5173271‑M2/10‑91 (MQ=255)

                                                                                      tataTCTAATTATCAAACTGCACTAAACTTACTAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGt      >  2:490305‑M2/5‑91 (MQ=255)

                                                                                      tataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGt      <  2:1465182‑M2/87‑1 (MQ=255)

                                                                                       ataTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGtt     <  2:1883502‑M2/88‑1 (MQ=255)

CTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGTC  >  USA300TCH1516_ALE/2087980‑2088160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.