BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 810109	224 (0.750)	11 (0.040)	9/134	NT	5.0%	intergenic (+40/‑78)	nrdE1/nrdF	Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta
*	?	USA300TCH1516_ALE	= 810116	228 (0.910)	11 (0.040)	9/134	NT	5.0%	intergenic (+47/‑71)	nrdE1/nrdF	Ribonucleoside‑diphosphate reductase subunit alpha 1/Ribonucleoside‑diphosphate reductase subunit beta

Only 100 of 337 total aligned reads displayed.

ATAAATTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTGGAA  >  USA300TCH1516_ALE/810026‑810206

ataaatTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAAtt                                                                                            <  1:2334924/91‑1 (MQ=255)

 tAAATTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTa                                                                                           <  2:1689947‑M2/91‑2 (MQ=255)

  aaaTTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTag                                                                                          <  1:2257733‑M2/91‑3 (MQ=255)

   aaTTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagc                                                                                         <  1:4763395‑M2/91‑4 (MQ=255)

   aaTTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagc                                                                                         <  1:2677338‑M2/91‑4 (MQ=255)

   aaTTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTCGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagc                                                                                         <  1:4848870‑M2/91‑4 (MQ=255)

    attattAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagca                                                                                        <  2:2523328‑M2/91‑5 (MQ=255)

    attattAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagca                                                                                        <  1:855007‑M2/91‑5 (MQ=255)

      tattaAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcaga                                                                                      >  2:72068‑M2/1‑85 (MQ=255)

       attaAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagat                                                                                     <  1:1679479‑M2/91‑8 (MQ=255)

       attaAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagat                                                                                     >  1:5561456‑M2/1‑84 (MQ=255)

          aaGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgat                                                                                  <  1:4002589‑M2/91‑11 (MQ=255)

           aGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgatt                                                                                 <  2:4832196‑M2/91‑12 (MQ=255)

           aGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgatt                                                                                 <  1:4463404‑M2/91‑12 (MQ=255)

            gtgtAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgatta                                                                                <  2:2845089‑M2/91‑13 (MQ=255)

             tgtAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgattag                                                                               <  1:3845819‑M2/91‑14 (MQ=255)

             tgtAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTagcagatgattag                                                                               >  2:1172235‑M2/1‑78 (MQ=255)

              gtAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGa                                                                              <  1:3106383/91‑1 (MQ=255)

               tAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGAc                                                                             <  2:305509/91‑1 (MQ=255)

                agaagaATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACt                                                                            <  2:3619884/91‑1 (MQ=255)

                agaagaATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACt                                                                            >  2:5487049/1‑91 (MQ=255)

                  aagaaTGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGc                                                                          <  2:848139/91‑1 (MQ=255)

                  aagaaTGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGc                                                                          <  2:3008856/91‑1 (MQ=255)

                   agaaTGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCt                                                                         >  2:2085832/1‑91 (MQ=255)

                   agaaTGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCt                                                                         >  1:1430273/1‑91 (MQ=255)

                      aTGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATg                                                                      >  2:228922/1‑91 (MQ=255)

                       tGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGt                                                                     >  1:3199196/1‑91 (MQ=255)

                        gTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTc                                                                    <  1:562380/91‑1 (MQ=255)

                        gTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTc                                                                    <  1:1840795/91‑1 (MQ=255)

                          aCAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTg                                                                  <  2:5252647/91‑1 (MQ=255)

                           cAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGt                                                                 <  1:3395177/91‑1 (MQ=255)

                             aGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTAt                                                               >  1:3046378/1‑91 (MQ=255)

                                tgttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTg                                                            <  2:1461574/91‑1 (MQ=255)

                                tgttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTg                                                            <  2:1101403/91‑1 (MQ=255)

                                tgttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTg                                                            <  2:5424917/91‑1 (MQ=255)

                                tgttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTg                                                            <  1:1143434/91‑1 (MQ=255)

                                 gttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGt                                                           >  1:4938207/1‑91 (MQ=255)

                                 gttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGt                                                           >  1:294468/1‑91 (MQ=255)

                                  ttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTc                                                          >  1:348295/1‑91 (MQ=255)

                                  ttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTc                                                          <  1:3436502/91‑1 (MQ=255)

                                  ttCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTc                                                          <  1:4167201/91‑1 (MQ=255)

                                   tctatctaACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCa                                                         >  2:2446688/1‑91 (MQ=255)

                                   tctatctaACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCa                                                         >  1:5189833/1‑91 (MQ=255)

                                    ctatctaACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCaa                                                        >  2:3292043/1‑91 (MQ=255)

                                       tctaACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAatta                                                     >  1:39784/1‑91 (MQ=255)

                                            cAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAg                                                <  2:3439694/91‑1 (MQ=255)

                                             aaTTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGt                                               <  1:2821984/91‑1 (MQ=255)

                                               ttAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTaa                                             <  1:4107370/91‑1 (MQ=255)

                                                   aTGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACAtt                                         >  2:4101553/1‑91 (MQ=255)

                                                     gTTGAAAATGACGAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTAc                                       <  2:3890740/91‑1 (MQ=255)

                                                     gTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTAc                                       <  2:1308258/91‑1 (MQ=255)

                                                      ttGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAGCATTACa                                      >  1:4638231/1‑91 (MQ=255)

                                                      ttGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACa                                      >  1:2396429/1‑91 (MQ=255)

                                                       tGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACag                                     <  1:1068014/91‑1 (MQ=255)

                                                       tGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACag                                     >  1:3609502/1‑91 (MQ=255)

                                                        gAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACagg                                    <  2:4577118/91‑1 (MQ=255)

                                                        gAAAATGACAAACAGCTAATCATCTGCACTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACagg                                    >  2:4202643/1‑91 (MQ=255)

                                                             tGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGaa                               <  1:1285935/91‑1 (MQ=255)

                                                              gACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGaaa                              <  2:122598/91‑1 (MQ=255)

                                                              gACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGaaa                              <  1:975804/91‑1 (MQ=255)

                                                              gACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGaaa                              <  1:5345620/91‑1 (MQ=255)

                                                               aCAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTTTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAAt                             <  2:2967264/91‑1 (MQ=255)

                                                               aCAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAAt                             >  2:4343887/1‑91 (MQ=255)

                                                               aCAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAAt                             >  1:4300591/1‑91 (MQ=255)

                                                               aCAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAAt                             <  2:1283806/91‑1 (MQ=255)

                                                                 aaaCAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATta                           >  2:3510615/1‑91 (MQ=255)

                                                                   aCAGCTACTCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGGAACATTACAGGAGGAAATtata                         <  2:5182166/91‑1 (MQ=255)

                                                                    cAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTatat                        <  1:2136722/91‑1 (MQ=255)

                                                                      gCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTc                      <  1:1783568/91‑1 (MQ=255)

                                                                      gCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTc                      <  1:5850336/91‑1 (MQ=255)

                                                                        tAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCAt                    <  1:3271574/91‑1 (MQ=255)

                                                                        tAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCAt                    <  1:5231903/91‑1 (MQ=255)

                                                                        tAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCAt                    <  1:3710332/91‑1 (MQ=255)

                                                                          atcatcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGa                  >  2:1409225/1‑91 (MQ=255)

                                                                          atcatcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGa                  <  1:571927/91‑1 (MQ=255)

                                                                          atcatcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGa                  >  2:1966030/1‑91 (MQ=255)

                                                                          atcatcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGa                  >  2:1903474/1‑91 (MQ=255)

                                                                          atcatcTGCTCAGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAACTTATATTCCTGa                  >  2:4477558/1‑91 (MQ=255)

                                                                           tcatcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGAt                 <  1:2531525/91‑1 (MQ=255)

                                                                            catcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATa                <  2:2336583/91‑1 (MQ=255)

                                                                            catcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATa                >  2:1609866/1‑91 (MQ=255)

                                                                             atcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAg               <  2:4002589/91‑1 (MQ=255)

                                                                             atcTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAg               <  2:4938207/91‑1 (MQ=255)

                                                                               cTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTGTAATCATGATAGCt             <  2:3684410/91‑1 (MQ=255)

                                                                               cTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCt             <  2:575942/91‑1 (MQ=255)

                                                                                tGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTg            <  1:79782/91‑1 (MQ=255)

                                                                                tGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTg            <  2:1730304/91‑1 (MQ=255)

                                                                                 gCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGt           <  2:3210797/91‑1 (MQ=255)

                                                                                 gCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGt           <  1:1491181/91‑1 (MQ=255)

                                                                                 gCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGt           <  2:4687465/91‑1 (MQ=255)

                                                                                  ctctGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGCGGAAATTATATTCATGATAGCTGtt          >  2:5006164/1‑91 (MQ=255)

                                                                                     tGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAAt       <  2:2610487/91‑1 (MQ=255)

                                                                                     tGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAAt       <  2:3114724/91‑1 (MQ=255)

                                                                                      gAATTagcagatgattagctgtttgtcattttcaacatttaattgttagatagaacaacttgtacattcttctacacttaataatttattt      <  1:636333‑M2/91‑87 (MQ=255)

                                                                                      gAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAAtt      <  1:1377916/91‑1 (MQ=255)

                                                                                       aaTTagcagatgattagctgtttgtcattttcaacatttaattgttagatagaacaacttgtacattcttctacacttaataatttatttc     <  2:5828954‑M2/91‑88 (MQ=255)

                                                                                       aaTTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTg     >  2:5370802/1‑91 (MQ=255)

                                                                                        aTTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTgg    <  1:1990983/91‑1 (MQ=255)

                                                                                        aTTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTgg    <  1:67007/91‑1 (MQ=255)

                                                                                         ttAGCAGATGATTAGACTGCTATGTCTGTATTTGTGAATTATTGAATAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTGGa   >  2:5656382/1‑91 (MQ=255)

ATAAATTATTAAGTGTAGAAGAATGTACAAGTTGTTCTATCTAACAATTAAATGTTGAAAATGACAAACAGCTAATCATCTGCTCTGAATTAGCAGATGATTAGACTGCTATGTCTGTATTTGTCAATTATTGAGTAACATTACAGGAGGAAATTATATTCATGATAGCTGTTAATTGGAA  >  USA300TCH1516_ALE/810026‑810206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.