BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	903240 =	278 (0.930)	15 (0.060)	9/140	NT	6.2%	coding (1888/2373 nt)	USA300HOU_RS04470	hypothetical protein
*	?	USA300TCH1516_ALE	903267 =	211 (0.810)	15 (0.060)	9/140	NT	6.2%	coding (1915/2373 nt)	USA300HOU_RS04470	hypothetical protein

Only 100 of 349 total aligned reads displayed.

AATGGAATGCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAACCT  >  USA300TCH1516_ALE/903177‑903357

 atggaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAaga                                                                                           >  2:2335909/1‑91 (MQ=255)

 atggaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAaga                                                                                           <  1:2901732/91‑1 (MQ=255)

 atggaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAaga                                                                                           >  1:2568570/1‑91 (MQ=255)

  tggaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAagag                                                                                          >  1:3478965/1‑91 (MQ=255)

  tggaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAagag                                                                                          >  2:2732507/1‑91 (MQ=255)

    gaatgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGaa                                                                                        >  2:4125777/1‑91 (MQ=255)

      atgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAtt                                                                                      >  1:105710/1‑91 (MQ=255)

      atgCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAtt                                                                                      >  1:729662/1‑91 (MQ=255)

        gCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAtttt                                                                                    >  1:4254177/1‑91 (MQ=255)

        gCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAtttt                                                                                    >  2:1118855/1‑91 (MQ=255)

        gCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGAATTAAAGAGAAtttt                                                                                    <  1:5173943/91‑1 (MQ=255)

        gCCTAAATTTAAAGACAAAACAGGAGGGACATTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAtttt                                                                                    >  2:3320930/1‑91 (MQ=255)

         catactctagcacttgctgattttttatatagtcttctttgattttaaaattctctttaatgccaattttaatggcattaaaGAGAAtttt                                                                                    <  2:3340783‑M2/9‑1 (MQ=255)

          cTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTaa                                                                                  >  2:381535/1‑91 (MQ=255)

           tAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTaaa                                                                                 >  2:5089775/1‑91 (MQ=255)

           tAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTaaa                                                                                 <  1:3408090/91‑1 (MQ=255)

            aaaTTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTaaaa                                                                                >  2:3577746/1‑91 (MQ=255)

             aaTTTATGGACAAAACAGTCGGGACTTTAAGATGGTTATTGGTAGTACCGTTTAATGCGAATTGTATT‑GGCATTAAAGAGTATTTTAatat                                                                               <  2:2860178/91‑1 (MQ=255)

             aaTTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAAt                                                                               >  1:5843336/1‑91 (MQ=255)

               tttAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCa                                                                             <  2:4585876/91‑1 (MQ=255)

                 tAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCaaa                                                                           <  1:2426950/91‑1 (MQ=255)

                 tAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCaaa                                                                           <  2:1504085/91‑1 (MQ=255)

                 tAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAAGTTTAAAATCaaa                                                                           >  2:3874592/1‑91 (MQ=255)

                   aaGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAaaga                                                                         >  1:1513796/1‑91 (MQ=255)

                    aGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAaagaa                                                                        >  1:3704313/1‑91 (MQ=255)

                    aGACAAAACAGGCGGGACTTCAAGAAGGCTATTGATAGTACCGTTTAATGCCAATATTAAT‑GGCATTAAAGAGAATTTTAAAATCAaagca                                                                        >  2:3068308/1‑89 (MQ=255)

                      aCAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAagaaga                                                                      <  2:448742/91‑1 (MQ=255)

                       cAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGAc                                                                     >  1:5578611/1‑91 (MQ=255)

                        aaaaCAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACt                                                                    <  2:4869014/91‑1 (MQ=255)

                        aaaaCAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACt                                                                    >  2:4581791/1‑91 (MQ=255)

                         aaaCAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACta                                                                   >  1:1273646/1‑91 (MQ=255)

                           aCAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACtata                                                                 >  1:5761248/1‑91 (MQ=255)

                            cAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACtatat                                                                >  2:1948626/1‑91 (MQ=255)

                            cAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACtatat                                                                <  2:441223/91‑1 (MQ=255)

                              ggCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATaa                                                              <  2:5694687/91‑1 (MQ=255)

                                 gggACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATaaaaa                                                           >  2:2560460/1‑91 (MQ=255)

                                 gggACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATaaaaa                                                           >  1:2521825/1‑91 (MQ=255)

                                     tagtcttctttgattttaaaattctcTTTAATGCCA‑TTAAAATTGGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCa                                                       <  1:197156‑M1/65‑1 (MQ=255)

                                       ttAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGc                                                     <  1:4093368/91‑1 (MQ=255)

                                           gaagGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGt                                                 >  2:2091554/1‑91 (MQ=255)

                                            aagGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCACCAAGTg                                                >  2:5362231/1‑91 (MQ=255)

                                             agGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGc                                               >  1:427021/1‑91 (MQ=255)

                                               ggtATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAAAAAAAAAAAAAAATCAGCAAGTGCTa                                             <  2:4191203/89‑1 (MQ=255)

                                                 tATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTaga                                           >  2:5525400/1‑91 (MQ=255)

                                                  aTTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTagag                                          <  2:2771770/91‑1 (MQ=255)

                                                  aTTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTagag                                          >  1:4041879/1‑91 (MQ=255)

                                                   ttGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGt                                         <  1:3633815/91‑1 (MQ=255)

                                                     gATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTAt                                       >  2:1176436/1‑91 (MQ=255)

                                                     gATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTAt                                       <  2:4930363/91‑1 (MQ=255)

                                                      aTAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTAtg                                      <  2:3463360/91‑1 (MQ=255)

                                                        aGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTAtgtg                                    >  1:1010655/1‑91 (MQ=255)

                                                         gTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGc                                   <  2:4342869/91‑1 (MQ=255)

                                                          ttctcTTTAATGCCA‑TTAAAATTGGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCt                                  <  1:3238427‑M1/86‑1 (MQ=255)

                                                          tACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCt                                  >  2:3779457/1‑91 (MQ=255)

                                                           aCCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCtt                                 >  1:4819044/1‑91 (MQ=255)

                                                           aCCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCtt                                 >  1:5021774/1‑91 (MQ=255)

                                                             cGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTta                               <  2:3704210/91‑1 (MQ=255)

                                                              gTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTtat                              >  1:876778/1‑91 (MQ=255)

                                                               TTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTtata                             <  2:5599299‑M1/91‑1 (MQ=255)

                                                               TTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTtata                             <  2:5510336‑M1/91‑1 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           >  1:1214317‑M1/1‑91 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           <  1:2863108‑M1/91‑1 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           <  2:5808051‑M1/91‑1 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           <  1:353061‑M1/91‑1 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           <  1:3799290‑M1/91‑1 (MQ=255)

                                                                 TAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATaaa                           <  1:5157886‑M1/91‑1 (MQ=255)

                                                                  AATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAg                          >  2:4755601‑M1/1‑91 (MQ=255)

                                                                  AATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAg                          <  2:5016367‑M1/91‑1 (MQ=255)

                                                                    TGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCa                        >  1:1088309‑M1/1‑91 (MQ=255)

                                                                      CCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAAt                      <  2:2033422‑M1/91‑1 (MQ=255)

                                                                       CAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAAtt                     >  2:1052295‑M1/1‑91 (MQ=255)

                                                                       CAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAAtt                     <  1:1702572‑M1/91‑1 (MQ=255)

                                                                        cattaaaattggcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaatt                     >  2:1408874‑M2/20‑91 (MQ=255)

                                                                        AATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAGGACTATATAAAGAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTa                    >  1:4880736‑M1/1‑91 (MQ=255)

                                                                        AATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTa                    <  1:2751279‑M1/91‑1 (MQ=255)

                                                                        AATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTa                    <  1:5648407‑M1/91‑1 (MQ=255)

                                                                         attaaaattggcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaatta                    >  1:4976008‑M2/19‑91 (MQ=255)

                                                                         attaaaattggcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaatta                    >  2:3170456‑M2/19‑91 (MQ=255)

                                                                         attaaaattggcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaatta                    >  1:3292433‑M2/19‑91 (MQ=255)

                                                                         aTTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaattaa                   <  1:2678854/91‑1 (MQ=255)

                                                                          ttttAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaattaat                  >  1:394359/1‑91 (MQ=255)

                                                                          ttttAAT‑AGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaattaat                  <  2:5578592/91‑1 (MQ=255)

                                                                           tttAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaattaatt                 <  2:802099/91‑1 (MQ=255)

                                                                           tttAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCaattaatt                 <  1:5494429/91‑1 (MQ=255)

                                                                             tAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTa               <  2:1299636/91‑1 (MQ=255)

                                                                              aaT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAg              >  1:5534849/1‑91 (MQ=255)

                                                                               aT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGa             >  2:4090266/1‑91 (MQ=255)

                                                                               aT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGa             >  2:242784/1‑91 (MQ=255)

                                                                                  ggcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGAtt           <  1:656180‑M2/82‑1 (MQ=255)

                                                                                   gcattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGAttt          >  2:1648868‑M2/9‑91 (MQ=255)

                                                                                    cattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGAtttt         <  1:930559‑M2/84‑1 (MQ=255)

                                                                                    cattaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGAtttt         <  1:5273708‑M2/84‑1 (MQ=255)

                                                                                     attaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTg        <  2:634198‑M2/85‑1 (MQ=255)

                                                                                      ttaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGa       <  1:1648868‑M2/86‑1 (MQ=255)

                                                                                      ttaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGa       >  1:2279551‑M2/6‑91 (MQ=255)

                                                                                      ttaaaGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGa       <  1:5348011‑M2/86‑1 (MQ=255)

                                                                                          aGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAAcc   >  1:4694119‑M2/2‑91 (MQ=255)

                                                                                           gagaATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAACCt  <  1:4535517/91‑1 (MQ=255)

                                                                                           gagaATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAACCt  <  1:3118496/91‑1 (MQ=255)

                                                                                           gagaATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAACCt  <  2:3967193/91‑1 (MQ=255)

AATGGAATGCCTAAATTTAAAGACAAAACAGGCGGGACTTTAAGAAGGTTATTGATAGTACCGTTTAATGCCAATTTTAAT‑GGCATTAAAGAGAATTTTAAAATCAAAGAAGACTATATAAAAAATCAGCAAGTGCTAGAGTATGTGCTTTATAAAGCAATTAATTTAGATTTTGAAACCT  >  USA300TCH1516_ALE/903177‑903357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.