| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2088038 | 200 (0.670) | 13 (0.060) | 11/126 | NT | 7.2% | intergenic (+55/+40) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | = 2088052 | 179 (0.760) | intergenic (+69/+26) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 | |||||
Only 100 of 432 total aligned reads displayed.
AATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTC > USA300TCH1516_ALE/2087948‑2088128 | aatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA > 1:1461189‑M1/1‑91 (MQ=255)aatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA < 1:5773851‑M1/91‑1 (MQ=255) atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAg > 1:1239396/1‑91 (MQ=255) tGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATACAGGTTTGGCAGa > 2:3768315/1‑91 (MQ=255) tGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGa > 2:1040630/1‑91 (MQ=255) ggTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc > 1:4330589/1‑91 (MQ=255) ggTCCTGGAAAAACTAATGAAGATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc < 1:4052134/91‑1 (MQ=255) tCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAt > 1:301374/1‑91 (MQ=255) ccTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAtt < 2:1637675/91‑1 (MQ=255) ccTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAtt < 2:5408538/91‑1 (MQ=255) cTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatg < 2:4438408‑M1/91‑8 (MQ=255) cTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAttt < 1:2796294/91‑1 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:2092530/91‑1 (MQ=255) gtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAGACATTTCATaa > 2:1698164‑M1/63‑91 (MQ=255) tagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAGACATTTCATAAc > 1:5329675‑M1/62‑91 (MQ=255) tagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAGACATTTCATAAc > 1:28183‑M1/62‑91 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc > 2:1543538/1‑91 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc < 2:2641925/91‑1 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc < 1:1987923/91‑1 (MQ=255) agacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAGACATTTCATAACt > 2:3860317‑M1/61‑91 (MQ=255) aaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACt < 1:3882191/91‑1 (MQ=255) aaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACt > 2:1797538/1‑91 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc < 2:3465417‑M2/91‑4 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca > 1:1861614‑M2/1‑86 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca > 1:2059874‑M2/1‑86 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca < 1:1282893‑M2/91‑6 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca < 1:5350306‑M2/91‑6 (MQ=255) tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaa > 2:2193037‑M2/1‑85 (MQ=255) aaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaac < 2:3002900‑M2/91‑9 (MQ=255) aaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaac < 2:3373621‑M2/91‑9 (MQ=255) aaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaac < 2:3373844‑M2/91‑9 (MQ=255) atGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctt > 1:1824987‑M2/1‑80 (MQ=255) tGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTATGGCAGACATTTCATAACTtgccaaaccttt < 2:1078961‑M2/91‑13 (MQ=255) gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttta > 2:2053776‑M2/1‑78 (MQ=255) aTACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttata < 1:3410162‑M2/91‑16 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt < 2:1265540/91‑1 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt < 1:3743604/91‑1 (MQ=255) agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt < 2:5318101/91‑1 (MQ=255) gtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATc < 1:5058237/91‑1 (MQ=255) ggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc > 1:1147893‑M1/30‑91 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATCAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc > 2:4868498/1‑91 (MQ=255) aaTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc < 2:5807801/90‑1 (MQ=255) tAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTg < 1:546098/91‑1 (MQ=255) aaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGAATGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCa > 2:774285/1‑91 (MQ=255) aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc < 2:4538332/91‑1 (MQ=255) aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc < 2:512209/91‑1 (MQ=255) aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc < 1:628324/91‑1 (MQ=255) ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttt < 2:1430770‑M1/91‑52 (MQ=255) ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACt > 1:4935757/1‑91 (MQ=255) aaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaaa > 1:1554164/1‑91 (MQ=255) aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc < 2:5007210/91‑1 (MQ=255) aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt < 1:2165934/91‑1 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt > 1:2631286/1‑91 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt < 1:1744340/91‑1 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt > 1:3329603/1‑91 (MQ=255) aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc > 2:4724062/1‑91 (MQ=255) aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc < 1:347826/91‑1 (MQ=255) gATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCa > 1:1009667/1‑91 (MQ=255) atTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaac < 1:5313582‑M1/91‑65 (MQ=255) atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa < 2:895834/91‑1 (MQ=255) ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt < 2:2903030/91‑1 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg > 1:5217920/1‑91 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg > 1:322111/1‑91 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg < 2:556793/91‑1 (MQ=255) cTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc < 1:360967/91‑1 (MQ=255) ttttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCt < 1:1061241/91‑1 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 2:3508583/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt < 2:5461904/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt < 1:3789506/91‑1 (MQ=255) tatataAAGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagt < 1:5608262‑M2/91‑61 (MQ=255) atataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagta < 2:654445‑M1/91‑76 (MQ=255) ATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt > 2:2141900‑M1/1‑91 (MQ=255) TATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTa > 1:568480‑M1/1‑91 (MQ=255) ATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAt > 2:2781451‑M1/1‑91 (MQ=255) taAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataataaagaaatatctaccttttaatttatgtaactactattagtatgc > 1:4411873‑M1/1‑13 (MQ=255) aaaGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgca < 1:4580968‑M1/91‑80 (MQ=255) aaaGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgca < 2:3415577‑M2/91‑66 (MQ=255) aGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcata < 1:3086098‑M1/91‑82 (MQ=255) aGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcata < 2:5218970‑M2/91‑68 (MQ=255) ggTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatat > 1:810085‑M1/1‑9 (MQ=255) ggTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatat > 2:5727414‑M1/1‑9 (MQ=255) GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTCCCt < 2:4057757‑M1/91‑1 (MQ=255) GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt > 2:5197877‑M1/1‑91 (MQ=255) GGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt > 1:4728451‑M1/1‑91 (MQ=255) tttGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatcttc > 2:5529842‑M1/1‑7 (MQ=255) tttGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattc > 2:2332239‑M1/1‑7 (MQ=255) TTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc < 1:867219‑M1/91‑1 (MQ=255) TTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc > 1:3373767‑M1/1‑91 (MQ=255) tGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat > 2:3615004‑M1/1‑5 (MQ=255) tGGCAagttatgaaatgtctgccaaaccgttatataaaaaagaaatatctaccttttaattgatgtaactactattagtatgcatattcat < 1:2706454‑M1/91‑87 (MQ=255) ggCAagttatgaaatgtctgccatacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt < 1:2481873‑M1/91‑88 (MQ=255) ggCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt > 2:4351259‑M1/1‑4 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:5429420‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 2:4980463‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta > 1:2370513‑M1/1‑3 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta < 1:2208681‑M1/91‑89 (MQ=255) GCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCATACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCcttt < 2:4183911‑M1/91‑2 (MQ=255) GCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg < 2:2564360‑M1/91‑1 (MQ=255) CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt > 1:343020‑M1/1‑91 (MQ=255) CAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt > 2:2378102‑M1/1‑91 (MQ=255) | AATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTC > USA300TCH1516_ALE/2087948‑2088128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |