BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2533878	269 (0.900)	17 (0.060)	11/148	NT	6.3%	coding (455/732 nt)	tcyC_2	L‑cystine import ATP‑binding protein TcyC
*	?	USA300TCH1516_ALE	= 2533890	254 (0.920)	17 (0.060)	11/148	NT	6.3%	coding (443/732 nt)	tcyC_2	L‑cystine import ATP‑binding protein TcyC

Only 100 of 333 total aligned reads displayed.

TTTAAAACATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACTCAAGTG  >  USA300TCH1516_ALE/2533800‑2533980

tttAAAACATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCGTTGCTAGTGCTCTTGCaa                                                                                            >  1:5765331/1‑91 (MQ=255)

   aaaaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtag                                                                                         >  1:1530739‑M2/1‑88 (MQ=255)

   aaaaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtag                                                                                         <  1:1869850‑M2/91‑4 (MQ=255)

    aaaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtagc                                                                                        >  1:1150083‑M2/1‑87 (MQ=255)

    aaaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtagc                                                                                        >  1:101483‑M2/1‑87 (MQ=255)

    aaaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtagc                                                                                        >  2:2594176‑M2/1‑87 (MQ=255)

     aaCATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtagca                                                                                       >  2:3258483‑M2/1‑86 (MQ=255)

      aCATCATTCGCAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAAtagcaa                                                                                      >  2:5559187‑M2/1‑85 (MQ=255)

       catcatTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAac                                                                                     >  2:2117161/1‑91 (MQ=255)

        atcatTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAaca                                                                                    >  2:2750382/1‑91 (MQ=255)

         tcatTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAacac                                                                                   <  2:1558417/91‑1 (MQ=255)

          catTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACg                                                                                  <  2:290824/91‑1 (MQ=255)

          catTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACg                                                                                  <  1:3502379/91‑1 (MQ=255)

           atTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgt                                                                                 <  1:3345021/91‑1 (MQ=255)

            ttCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgtt                                                                                <  1:1436101/91‑1 (MQ=255)

              cacaAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTATTGCAAGAGCACtagcaatgaaccct                                                                              >  1:2152020‑M2/1‑77 (MQ=255)

              cacaAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttgt                                                                              <  1:4111743/91‑1 (MQ=255)

                caAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttgttg                                                                            <  1:3927669/91‑1 (MQ=255)

                caAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttgttg                                                                            <  2:3567279/91‑1 (MQ=255)

                 aaGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttgttgt                                                                           >  2:5157069/1‑91 (MQ=255)

                 aaGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttgttgt                                                                           <  2:3926886/91‑1 (MQ=255)

                  aGTGCAGGATCAAGTTCAGATGTTGGTTCATCAAACAACATCACTGTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACgttattgtt                                                                          <  2:5747249/91‑1 (MQ=255)

                    ttCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGa                                                                        <  2:2084892/91‑1 (MQ=255)

                    ttCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGa                                                                        <  2:2249092/91‑1 (MQ=255)

                       aGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGacca                                                                     <  1:5279718/91‑1 (MQ=255)

                        ggATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccac                                                                    >  1:5116199/1‑91 (MQ=255)

                        ggATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccac                                                                    >  2:876170/1‑91 (MQ=255)

                        ggATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccac                                                                    >  1:5665484/1‑91 (MQ=255)

                        ggATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccac                                                                    >  1:4118695/1‑91 (MQ=255)

                        ggATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccac                                                                    >  1:3988498/1‑91 (MQ=255)

                         gATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccacc                                                                   >  1:5001907/1‑91 (MQ=255)

                         gATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGaccacc                                                                   >  2:542716/1‑91 (MQ=255)

                          aTCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCt                                                                  >  1:132668/1‑91 (MQ=255)

                             aaGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGAt                                                               <  1:3813083/91‑1 (MQ=255)

                             aaGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGAt                                                               <  1:2464387/91‑1 (MQ=255)

                              aGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTATTGCAAGAGCACtagcaatgaaccctaaagtgatgttgtttg                                                              >  1:1301109‑M2/1‑61 (MQ=255)

                               gTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATaa                                                             <  1:4530885/91‑1 (MQ=255)

                                tGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAAt                                                            >  2:1036606/1‑91 (MQ=255)

                                  cAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGc                                                          <  1:2918444/91‑1 (MQ=255)

                                    gATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAt                                                        <  1:5353232/91‑1 (MQ=255)

                                     aTGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAtg                                                       <  1:544843/91‑1 (MQ=255)

                                     aTGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAtg                                                       >  1:1695416/1‑91 (MQ=255)

                                       gTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAtgtg                                                     >  1:321157/1‑91 (MQ=255)

                                       gTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAtgtg                                                     >  2:1631972/1‑91 (MQ=255)

                                       gTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCAtgtg                                                     <  1:5220507/91‑1 (MQ=255)

                                         tGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGa                                                   >  1:1104445/1‑91 (MQ=255)

                                          ggTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGAc                                                  <  2:3812758/91‑1 (MQ=255)

                                           gTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACg                                                 <  1:3790595/91‑1 (MQ=255)

                                           gTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACg                                                 >  2:1145315/1‑91 (MQ=255)

                                            ttCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGt                                                <  1:4605621/91‑1 (MQ=255)

                                            ttCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGt                                                >  2:4069170/1‑91 (MQ=255)

                                             tcatcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGtt                                               <  1:2178085/91‑1 (MQ=255)

                                             tcatcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGtt                                               <  2:5055263/91‑1 (MQ=255)

                                              catcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTg                                              <  2:2704091/91‑1 (MQ=255)

                                                tcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGAt                                            >  1:4771040/1‑91 (MQ=255)

                                                tcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGAt                                            <  2:1676153/91‑1 (MQ=255)

                                                tcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGAt                                            >  2:1600177/1‑91 (MQ=255)

                                                tcaAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGAt                                            <  2:3381383/91‑1 (MQ=255)

                                                 caAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATc                                           <  2:1290296/91‑1 (MQ=255)

                                                 caAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATc                                           >  1:19740/1‑91 (MQ=255)

                                                  aaccaacaTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCt                                          <  2:4373705/88‑1 (MQ=255)

                                                  aaaCAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCt                                          <  1:428451/91‑1 (MQ=255)

                                                   aacaacATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCtt                                         <  1:2213001/91‑1 (MQ=255)

                                                     caacaTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTg                                       >  1:1239292/1‑91 (MQ=255)

                                                     caacaTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTg                                       >  2:196087/1‑91 (MQ=255)

                                                       acaTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGAc                                     <  2:4486835/91‑1 (MQ=255)

                                                       acaTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGAc                                     <  1:313802/91‑1 (MQ=255)

                                                        caTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACa                                    <  2:2434941/91‑1 (MQ=255)

                                                        caTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACa                                    <  1:1803132/91‑1 (MQ=255)

                                                        caTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACa                                    <  1:1510893/91‑1 (MQ=255)

                                                         aTCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACAt                                   <  2:5600440/91‑1 (MQ=255)

                                                          tCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACAtg                                  >  1:91072/1‑91 (MQ=255)

                                                           cACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACAtgt                                 >  2:3111878/1‑91 (MQ=255)

                                                            aCTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACAtgtg                                <  1:2744295/91‑1 (MQ=255)

                                                            aCTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACAtgtg                                >  1:3679892/1‑91 (MQ=255)

                                                             cTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACgtgtgt                               <  2:4702949/91‑1 (MQ=255)

                                                             cTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATgtgt                               <  1:3548951/91‑1 (MQ=255)

                                                                tAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTaa                            <  1:2370229/91‑1 (MQ=255)

                                                                  gggTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAAc                          <  1:3274859/91‑1 (MQ=255)

                                                                   ggTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAAcc                         <  1:824470/91‑1 (MQ=255)

                                                                     ttCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCGTGTGGACGTTGATCTTTGAAATGTGTTAAACCaa                       <  2:944412/91‑1 (MQ=255)

                                                                      tCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAAc                      <  2:2403464/91‑1 (MQ=255)

                                                                      tCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAAc                      <  2:4949981/91‑1 (MQ=255)

                                                                         ttGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACttt                   >  2:43292/1‑91 (MQ=255)

                                                                         ttGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACttt                   <  2:3209606/91‑1 (MQ=255)

                                                                           gCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTtct                 <  2:754767/91‑1 (MQ=255)

                                                                               gTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAg             <  2:3986913/91‑1 (MQ=255)

                                                                                tGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGt            <  1:595000/91‑1 (MQ=255)

                                                                                tGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGt            <  1:5559362/91‑1 (MQ=255)

                                                                                 gCTCTTGCAAtagcaatgaaccctaaagtgatgttgtttgatgaaccaacatctgcacttgatcctgaacttgtgaatgatgttttaaagg           <  1:4401855‑M2/91‑82 (MQ=255)

                                                                                 gCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCttt                                        >  2:1320455/1‑62 (MQ=255)

                                                                                  ctctTGCAAtagcaatgaaccctaaagtgatgttgtttgatgaaccaacatctgcacttgatcctgaacttgtgaatgatgttttaaaggt          <  2:5277726‑M2/91‑83 (MQ=255)

                                                                                  ctctTGCAAtagcaatgaaccctaaagtgatgtagtttgatgaaccaacatctgcacttgatcctgaacttgtgaatgatgttttaaaggt          <  1:5813692‑M2/91‑83 (MQ=255)

                                                                                   tctTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAAc         >  2:3531980/1‑91 (MQ=255)

                                                                                    ctTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACt        >  2:4568495/1‑91 (MQ=255)

                                                                                    ctTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACt        <  1:2400601/91‑1 (MQ=255)

                                                                                      tGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACTCa      >  2:1467697/1‑91 (MQ=255)

                                                                                         aaTAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACTCAAGt   >  1:2596025/1‑91 (MQ=255)

                                                                                         aaTAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTCTGACATGTGTTAAACCAACTTTCTCAAGTAACTCAAGt   >  1:4856372/1‑91 (MQ=255)

                                                                                          aTAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACTCAAGTg  <  2:5508472/91‑1 (MQ=255)

TTTAAAACATCATTCACAAGTTCAGGATCAAGTGCAGATGTTGGTTCATCAAACAACATCACTTTAGGGTTCATTGCTAGTGCTCTTGCAATAGCAACACGTTGTTGTTGACCACCTGATAATGCATGTGGACGTTGATCTTTGACATGTGTTAAACCAACTTTCTCAAGTAACTCAAGTG  >  USA300TCH1516_ALE/2533800‑2533980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.