mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 512,643 | 0 | A | G | 50.0% | ‑6.1 / 115.7 | 76 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| * | USA300TCH1516_ALE | 111,516 | 0 | C | A | 31.7% | 70.4 / 33.9 | 41 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 111,512 | 0 | A | G | 29.5% | 56.6 / 32.6 | 44 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
| * | USA300TCH1516_ALE | 2,416,694 | 0 | T | C | 20.7% | 59.1 / 10.3 | 29 | E430G (GAA→GGA) | mleN_1 | Malate‑2H(+)/Na(+)‑lactate antiporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 4311 = | 103 (0.960) | 8 (0.020) | 5/258 | 10.8 | 1.5% | intergenic (+276/‑189) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
| ? | NC_012417 | 2053 = | 924 (0.980) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 2264 = | 107 (1.000) | 8 (0.020) | 4/258 | 11.5 | 1.5% | intergenic (+44/+124) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2053 = | 924 (0.980) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 2342 = | 119 (1.110) | 4 (0.010) | 3/258 | 12.2 | 0.75% | intergenic (+122/+46) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 1975 = | 954 (1.010) | intergenic (+208/+118) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 2342 = | 119 (1.110) | 4 (0.040) | 3/258 | 12.2 | 3.7% | intergenic (+122/+46) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | CP000731 | 4322 = | 96 (0.970) | intergenic (+287/‑178) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein | |||||
| * | ? | CP000731 | 2264 = | 107 (1.000) | 4 (0.040) | 3/258 | 12.2 | 3.7% | intergenic (+44/+124) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | CP000731 | 2353 = | 108 (1.090) | intergenic (+133/+35) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 4294 = | 100 (0.930) | 7 (0.010) | 3/264 | 12.4 | 1.4% | intergenic (+259/‑206) | USA300HOU_pUSA300HOUMR0006/cadR | hypothetical protein/cadmium binding protein |
| ? | NC_012417 | 2073 = | 904 (0.940) | intergenic (+306/+20) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000731 | 2247 = | 115 (1.070) | 7 (0.010) | 3/264 | 12.4 | 1.4% | intergenic (+27/+141) | USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2073 = | 904 (0.940) | intergenic (+306/+20) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1964 = | 1028 (1.010) | 8 (0.010) | 5/258 | 39.5 | 0.85% | intergenic (+197/+129) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2053 = | 924 (0.980) | intergenic (+286/+40) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1947 = | 1035 (1.010) | 7 (0.010) | 3/264 | 41.8 | 0.74% | intergenic (+180/+146) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2073 = | 904 (0.940) | intergenic (+306/+20) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||