New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	512620 =	44 (0.950)	25 (0.800) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	21/166	NT	45.8%	intergenic (+688/‑6075)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
	?	USA300TCH1516_ALE	1998278 =	NA (NA)					intergenic (‑6/+3329)	USA300TCH1516_01882/USA300TCH1516_01883	tRNA‑Val/tRNA‑Ala

GTTTGTAACTTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATTAACATTTAAGTCAATAACTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/512747‑512620 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAT  >  USA300TCH1516_ALE/1998278‑1998407                                                                                                                                 ||||||||||||||||||||||||||||||||||||||||                                                                                                                                   GTTTGTAATTTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCT                                                                                                                                                                      <  2:352937/134‑1       AACTTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCA                                                                                                                                                                >  2:281359/1‑134          TTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGCCTTAATTATACATTTTATCAACATTTAACTCAATAACTTTTTTTATCTTGTCCATTT                                                                                                                                                             >  1:514262/1‑134          TTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTAAATAACTTTTTTTATCTTGTCCATTT                                                                                                                                                             >  2:291190/1‑134          TTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTCTTCTTACCTACCAGCATTAATTATACATTTTAACAACATTTAAATTAATAACTTTTTTTATTTTGTACATTT                                                                                                                                                             >  1:424204/1‑134           ttTAGTTACGTTTTTGCGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTT                                                                                                                                                            <  2:236852/132‑1            ATAGTTACGTTCTTTGGAATTAAAGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTA                                                                                                                                                           <  1:54791/134‑1                   CGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTA                                                                                                                                                    <  1:452081/134‑1                      TTTGTGGCATTAACGTTGACATATTGTCATTCGGCTGTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACC                                                                                                                                                 <  1:175188/134‑1                         TTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAATTCAATAACTTTTTTTATCTTCTCCATTTTATTTTTTATCCAga                                                                                                                                              >  2:384755/1‑132                         TTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAA                                                                                                                                              >  1:375005/1‑134                           GGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATCACTTTTTTTATCTTGTCCATTTTCTTCTTTCACCAACAT                                                                                                                                            >  1:67117/1‑134                             AATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTT                                                                                                                                          >  1:58645/1‑134                             AATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTACATTTTATTTTTCAACCGAAATTT                                                                                                                                          >  2:58523/1‑134                              ATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTG                                                                                                                                         >  2:175797/1‑134                                  ACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGTTTA                                                                                                                                     >  2:545301/1‑134                                        ACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTCCTTTTTAACCAAAATTTGATTAAAAAAC                                                                                                                               <  1:577506/134‑1                                        ACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTATAAAAATTATCCATTATATTTTTTAACCAAAATTTGATTAAAAAAC                                                                                                                               >  1:46585/1‑134                                              TGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTG                                                                                                                         >  1:480247/1‑134                                                   gTCAGTTATCAATGTTCATGTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAAC                                                                                                                    <  1:464429/133‑1                                                     CAGTTTTCAATGTTCATATTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGACAAAAAAACTGCCTGGCCACGT                                                                                                                  >  2:452211/1‑134                                                      AGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTT                                                                                                                 <  2:374335/134‑1                                                      AGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTT                                                                                                                 <  1:328369/134‑1                                                       GTTTTCAATGTTCATTTTTCTTATCGTCAATAATTAATTATACATTTTAACAGCATGTCTGTCAACAACTTTTTTGATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTC                                                                                                                <  2:590052/134‑1                                                            CAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTC                                                                                                           >  2:515403/1‑134                                                                   CATTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCTAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGA                                                                                                    >  1:28748/1‑134                                                                     TTTTTCTTACCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATGTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAAC                                                                                                  <  1:181490/134‑1                                                                      TTTTCTTACCGACAAGAATTAATTATACATTCTGTCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACG                                                                                                 <  2:432186/134‑1                                                                              CCGACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTTTTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCTGAACGTAAGTTCG                                                                                         >  1:282772/1‑134                                                                                 ACAAGAATTAATTATACATTTTATCAACATTTAAGTCAATAAATTTTTTGCTGCCGTCCACACTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACT                                                                                      <  1:281359/134‑1                                                                                 ACAAGAATTAATTATACATTTTATCAACAGTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACT                                                                                      <  1:64443/134‑1                                                                                    AGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAACATTTGCTTAAAAAACTTCCTGGCAACGTTCTACTATAGAGGAACGTAAGTTCGAATAgc                                                                                   >  1:130958/1‑132                                                                                    AGAATTAATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGCAACGTAAGTTCGACTACC                                                                                   >  2:17611/1‑134                                                                                      AATTAAGTATACATTTTAAAAACATTTAAGTGAATAACTTTTTTTATCTTGTCCATTTTATTTTGTAACCAAAATTTGATTAAGAAACTGCCTGGCAACGGTCTACACTAGGGGAAGGTACGTTCGACTAGCAT                                                                                 >  2:288858/1‑134                                                                                          AATTATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAC                                                                             <  1:332890/134‑1                                                                                              ATACATTTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCAATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCGACTTTCTACTCTAGCGGAACGTAAGTTCGACGACCATCGCTGCTA                                                                         >  2:451538/1‑134                                                                                                    TTTATCAACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGC                                                                   <  1:515403/134‑1                                                                                                           ACATTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTTACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTAATCTAGTGGAAAGTAAGTTCGACTACCATCGACGATAAGGAACTTAACTT                                                            >  1:40024/1‑134                                                                                                             ATTTTAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCGAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCT                                                          <  2:329204/134‑1                                                                                                              TTTAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACTTTCTACTCTAGCGGAACGTAATTTCAACAACCATCGACGCTAAGAAGCTTACCTACTa                                                         >  2:207010/1‑133                                                                                                                tcacTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTCAACCTATTTTTGATTAAAAAACTTCCTGGCTACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTG                                                       <  1:58523/130‑1                                                                                                                TAAGTCAATAACTTTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTG                                                       <  2:58645/134‑1                                                                                                                 AAGTCAATAACTTTTTTTATCTTGTCCTTTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCAGGCAACGGACTACGCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGT                                                      <  1:213774/134‑1                                                                                                                             TTTTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTCGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTATGTGTTCGGCATGGGAA                                          >  1:68697/1‑134                                                                                                                             TTTTTTATCTTACCCATGTTATTTTTTAACCAAACTTTGAGTAAAAAACTGCCTAGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGTCATGGGAA                                          <  2:38630/134‑1                                                                                                                               TTTTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACA                                        <  1:375027/134‑1                                                                                                                                    gctgtTCCATTTTATTTTTTATCCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGT                                   <  2:157598/129‑1                                                                                                                                      TTGTCCGTGTTATGTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCGACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGA                                 <  2:46585/134‑1                                                                                                                                      TTGTCCATTTTATTTTTTAACCACACTTTGATTAAAAAACTCCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGTCGCTAAGGCGCTTATCTTCTGTGTTCAGCATATGTACAGGTATGA                                 >  1:210523/1‑134                                                                                                                                          CCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTC                             <  2:286390/134‑1                                                                                                                                          CCATTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTC                             <  1:340514/134‑1                                                                                                                                            tTTTTATTTTTGTACCAAAATTTTATTAAAATGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCT                           <  1:438347/133‑1                                                                                                                                             TTTTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAACTGAACGTAGGTTCGACTACCATCGACGCTAAGGAACTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACATCCTT                          >  2:339707/1‑134                                                                                                                                               TTATTTTTTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTCCGTTCGACTACCATCGACGCTAATGAGCTTAACTTCTGTATTCGGCATGGGAACAGGTGTGACCTCCTTGC                        >  1:510210/1‑134                                                                                                                                                    tttgatCCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAG                   <  2:27071/128‑1                                                                                                                                                    tgttcACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACCCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAG                   <  2:606667/129‑1                                                                                                                                                     TTTAACCAAAATTTGATTAAAAAACTGCCTGGCCACGTTCTACTCTTGCGGAACGTATGTTCGACTACCATCAAAACTAAAGAGCTTAACTTCTGTGTTCGGAATGGGAACAGGTGTGACCTCCTTGCTATAGT                  >  1:58567/1‑134                                                                                                                                                      TTAACCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTC                 <  2:375005/134‑1                                                                                                                                                          CCAAAATTTGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAATTTAGCCTCCTATCAACGCTAAGGAGCTTAACTTGTGTGTTCGGCATGAGAACAAGTGTGACCTCCTTGCTATCGTaccaa             >  2:367884/1‑129                                                                                                                                                            aagATTTGATGAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGA           <  2:47370/131‑1                                                                                                                                                                  TGATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATG     <  2:28748/134‑1                                                                                                                                                                   GATTAAAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGA    >  1:600925/1‑134                                                                                                                                                                     TTAAAAATCGGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAT  <  2:549300/134‑1                                                                                                                                 ||||||||||||||||||||||||||||||||||||||||                                                                                                                                   GTTTGTAACTTATAGTTACGTTTTTTGGAATTAACGTTGACATATTGTCATTCAGTTTTCAATGTTCATTTTTCTTACCGACAAGAATTAATTATACATTTTATTAACATTTAAGTCAATAACTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/512747‑512620 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAT  >  USA300TCH1516_ALE/1998278‑1998407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.