New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	895785 =	54 (1.170)	4 (0.100)	3/212	NT	9.4%	coding (806/822 nt)	metQ_2	Methionine‑binding lipoprotein MetQ
	?	USA300TCH1516_ALE	= 909740	31 (0.780)					intergenic (‑663/‑371)	USA300HOU_RS04500/csbD_1	hypothetical protein/Stress response protein CsbD

AAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACA  >  USA300TCH1516_ALE/895653‑895917                                                                                                                                     |                                                                                                                                     aaGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGtt                                                                                                                                     >  1:58806/1‑134 (MQ=255)      ggcaaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgctttcccttgcacttccttgatattcttgctaaTTATTcc                                                                                                                                <  1:195424‑M1/7‑1 (MQ=255)      ggcaaaaaaaggacataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctgtctaaTTATTcc                                                                                                                                <  2:410973‑M1/7‑1 (MQ=255)       gcacaaaaaaggcagtatttcagaacaaagggcaagggtatgaataataaattatcttgaaaattttatacatgcatatatatcaatgttttgattggccttgaacttccttgataatctggctaaTTATTCCt                                                                                                                               >  2:144088‑M1/127‑134 (MQ=255)        caaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTg                                                                                                                              <  1:511825‑M1/9‑1 (MQ=255)        caaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTg                                                                                                                              <  2:143885‑M1/9‑1 (MQ=255)        caaaaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataaaaatgttttaattgcccttgaacttacttaataatatagataaTTATTCctt                                                                                                                              <  1:393885‑M1/9‑2 (MQ=255)         ccTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGc                                                                                                                             <  2:506519/134‑1 (MQ=255)         aaaaaaagggcataattttgaaactaagggcaatggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctgcctaaTTATTCCTGc                                                                                                                             >  2:371615‑M1/125‑134 (MQ=255)          cTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATGAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCt                                                                                                                            >  1:586830/1‑134 (MQ=255)          cTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCt                                                                                                                            <  2:70466/134‑1 (MQ=255)          aaaaaagagcataattttgaaacaaagggaaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCt                                                                                                                            >  1:205344‑M1/124‑134 (MQ=255)           aaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatttttttattgcccttgaacttccttaataaactggctaaTTATTcctgtta                                                                                                                           <  1:311121‑M1/12‑4 (MQ=255)           aaaaagggcataattttgaaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgtgttgattgcccttgaacttccttggtaatctggctgaTTATTCGTGCTa                                                                                                                           <  2:143978‑M1/12‑1 (MQ=255)             aTGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTaaa                                                                                                                         <  1:453690/134‑1 (MQ=255)                cAAAATTAATTGCTGTTAAAGAAGGACATCAAGATGAAAAGAAAAGCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAaataa                                                                                                                      <  1:198648/134‑1 (MQ=255)                   aCTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAc                                                                                                                   >  2:573957/1‑134 (MQ=255)                      tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACGATCTAAAGATATTAAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTACTGCTAAATAATACCaa                                                                                                                >  2:39266/1‑134 (MQ=255)                      tAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCATGCTAAATAATACCaa                                                                                                                >  1:224762/1‑134 (MQ=255)                       aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTGAATAATGCCAAt                                                                                                               >  1:329757/1‑134 (MQ=255)                       aaTTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTACCGATACATCTGCTAAATAATACCAAt                                                                                                               >  2:95652/1‑134 (MQ=255)                        aTTGCTGTTAAAGAAGGACATCAAGACGATAAGAAAATCAAAGCATTAATTGAAGTATTACAGTCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAAtt                                                                                                              <  2:316727/134‑1 (MQ=255)                          tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaa                                                                                                            >  2:254681/1‑134 (MQ=255)                          tGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaa                                                                                                            >  2:338306/1‑134 (MQ=255)                           gCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaa                                                                                                           <  1:118752/134‑1 (MQ=255)                            cTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaat                                                                                                          <  1:316853/134‑1 (MQ=255)                             aaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACTAATtaaata                                                                                                         <  1:468042‑M1/30‑1 (MQ=255)                             aaacaaagggcaagggtatgaataataaattatcttgaaaattttataaatgcatatataacaatgttttgattgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAaataaata                                                                                                         <  1:526322‑M1/30‑1 (MQ=255)                              gTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataa                                                                                                        >  1:102085/1‑134 (MQ=255)                              gTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataa                                                                                                        >  2:425924/1‑134 (MQ=255)                               ttAAAGAATGACATCAATATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATtaaataaa                                                                                                       <  2:573812/134‑1 (MQ=255)                                      agGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATAccc                                                                                                <  1:58506/134‑1 (MQ=255)                                       ggACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCt                                                                                               >  1:590670/1‑134 (MQ=255)                                          cATCAATATGAGAAGAAAATCAAAGCCTTTCTCCAGTTAGTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATCGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTta                                                                                            <  2:586830/134‑1 (MQ=255)                                           aTCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaa                                                                                           >  1:364941/1‑134 (MQ=255)                                            tCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTAAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaat                                                                                          >  1:402836/1‑134 (MQ=255)                                             cAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTTAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTtaata                                                                                         <  1:15919/134‑1 (MQ=255)                                              aaGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAACAATTAAATAAAAATAACCTTtaataa                                                                                        >  1:47740/1‑134 (MQ=255)                                                  tgatAAGAAAATCAAAGCAATAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATaacaac                                                                                    <  2:56292/134‑1 (MQ=255)                                                            aTCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAgggg                                                                          <  1:546002/134‑1 (MQ=255)                                                             tCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                         <  1:584117/134‑1 (MQ=255)                                                             tCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGt                                                                         >  2:330196/1‑134 (MQ=255)                                                             tCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGCGt                                                                         >  2:200574/1‑134 (MQ=255)                                                               aaaGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTa                                                                       >  2:159522/1‑134 (MQ=255)                                                                 aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtt                                                                     >  1:399622/1‑134 (MQ=255)                                                                 aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAtt                                                                     >  2:438619/1‑134 (MQ=255)                                                                 aGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGAGGTAAtt                                                                     >  1:196531/1‑134 (MQ=255)                                                                    aTTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTGAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTAttttt                                                                  <  1:552081/134‑1 (MQ=255)                                                                               ttatACAATCGAAAGAAATTCGAGAATTCATGAATAAAAAATACAATGGTGCAGTTATTCGTGCTAAATAATACCAACTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTTGGTATTGaa                                                       <  2:420863/131‑1 (MQ=255)                                                                                 ttACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACTCTTAAGGCGTTATTTTTGTGGTATTGaaaa                                                     >  1:236158/1‑134 (MQ=255)                                                                                  tACAATCTAAAGATATTTAATACTTTATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATCAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAAt                                                    <  1:528565/134‑1 (MQ=255)                                                                                  tACAATCTAAAGATATTGAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTTCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAAt                                                    <  2:462359/134‑1 (MQ=255)                                                                                  tACAATCTAAAGATATTCAAGATTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGTGGTTATTTTTGTGGTATTGAAAAt                                                    <  2:137823/134‑1 (MQ=255)                                                                                  tACAAACTATATATATTTAAGACTTTATTATTGATATATACAATTGTGCAGTTATTACTGCTAAATAATAACAATTAAATAAAAATACCCTATAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAAt                                                    <  1:161922/134‑1 (MQ=255)                                                                                       tCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACTCTATAATAAAAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATaaaaa                                               <  2:102085/134‑1 (MQ=255)                                                                                        cTAAAGATATTCAAGACTTCATTCATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATCATACCAGTTACATATATATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGAGGTATTGAAAATaaaaaa                                              >  1:25917/1‑134 (MQ=255)                                                                                           aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                           >  2:472380/1‑134 (MQ=255)                                                                                           aaGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAggg                                           >  2:231554/1‑134 (MQ=255)                                                                                             gATAGTAAAGACTTCATTAAGGAAAAATACAATGGGGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTTCGGTATTGAAAATAAAAAATGGca                                         <  2:563001/134‑1 (MQ=255)                                                                                                  tCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACAAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACaaaa                                    >  2:300312/1‑134 (MQ=255)                                                                                                    attgcccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAgg                                  <  1:543685‑M1/101‑1 (MQ=255)                                                                                                        cccttgaacttccttgataatctggctaaTTATTCCTGCTAAATAATACCCATTAAATAAAAATACTTTTTAACAACAACGATTAGGGGGATATTTTTGTGGTATTGAAAATAAAAAAGTGCACAAAAGGGGCa                              <  1:226939‑M1/105‑1 (MQ=255)                                                                                                          tCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTACGGGGTTATAGAAATGATATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                            >  2:428617/1‑134 (MQ=255)                                                                                                          tCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGt                            >  2:500373/1‑134 (MQ=255)                                                                                                            aTTAAGTAAAAATAAAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGtat                          <  2:135707/134‑1 (MQ=255)                                                                                                                  gAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATAACAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGAGCACAAAAGGGGCAGTCAATGCaa                    >  2:411830/1‑134 (MQ=255)                                                                                                                      aaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                >  2:18178/1‑134 (MQ=255)                                                                                                                      aaTACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTa                >  1:292249/1‑134 (MQ=255)                                                                                                                              ggTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGAGTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAAttt        <  1:165417/134‑1 (MQ=255)                                                                                                                                ggCAGTTATTCCTCCTACTTAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTTGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTa      <  2:2179/133‑1 (MQ=255)                                                                                                                                 gCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTCAACATAACACAGTGTACATAAGGCGCACTCAATGCACATTATCCACTTTTaa     >  2:362018/1‑134 (MQ=255)                                                                                                                                    gTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGCTATTGAAAGAAAAAAAGGGCACACAAGGGGCAGTATATGCAAATTATCGAATTTTAAACa  >  2:69526/1‑134 (MQ=255)                                                                                                                                     |                                                                                                                                     AAGATAATCCTTATGCAAACTTAATTGCTGTTAAAGAAGGACATCAAGATGATAAGAAAATCAAAGCATTAATTGAAGTATTACAATCTAAAGATATTCAAGACTTCATTAATGAAAAATACAATGGTGCAGTTATTCCTGCTAAATAATACCAATTAAATAAAAATACCCTTTAATAACAACGATTAAGGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACA  >  USA300TCH1516_ALE/895653‑895917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.