| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 613929 | 21 (0.690) | 5 (0.180) | 3/262 | 3.6 | 18.3% | coding (2241/2844 nt) | sdrC | Serine‑aspartate repeat‑containing protein C |
| ? | USA300TCH1516_ALE | 614110 = | 25 (0.880) | coding (2422/2844 nt) | sdrC | Serine‑aspartate repeat‑containing protein C | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAG > USA300TCH1516_ALE/613789‑614057 | aCGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcggttcagac > 1:51687/1‑141 (MQ=255)aCGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcgattcagac > 2:115641/1‑141 (MQ=255) cGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcgattcagaca > 1:157156/1‑141 (MQ=255) cGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattaagaccgcgaatcagaca > 1:294222/1‑141 (MQ=255) ggATCATGATGATTTCAAACGTGATAATGGCTACGACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATACAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcgattcagacag < 2:192308/141‑1 (MQ=255) tgatTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGAGTCAGACACCGAGTCAGACAGAgacccaca > 2:69787/1‑139 (MQ=18) cacaCTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACACAGAcacagactcaga > 2:181095/1‑141 (MQ=255) acacTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGCCTCAGACTCAGAt > 1:202822/1‑141 (MQ=255) acgtGAGAAGGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGAGTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAg < 2:203508/138‑1 (MQ=255) gggCTACTACGAATAAGAAACATCAGATAGCGACTCAGATTCTGACAGTGCTCCGAGGTCACAGAGCGCCTCAGAGTCACATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgattcaga < 1:335116/140‑1 (MQ=25) tactacGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATACAAAAATAAAGATCTACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATGCAGACAGCGACTCAGGCGCAGTTAGCgatgcagattca > 1:317285/1‑141 (MQ=21) ctacGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGAttcagattcaga < 1:115641/141‑1 (MQ=255) cGAAGAAGAAACATCAGAGAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAg < 2:239212/141‑1 (MQ=255) gCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGCTTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCCGACTCAGACAGCg > 1:194971/1‑141 (MQ=255) cGACTTAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGa < 2:212140/141‑1 (MQ=255) ggtagcgactcaaaatcagatagcatctcagattcagaCAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGTTAGCGTCGCAGTCTCAGAt < 2:218152/139‑1 (MQ=18) gactcagattcagatagcgactcagattcagaCAGCGATTCAGACAGAGACTGAGACTCAGAGAGCGATTCAGATTCAGACCGCGACTCCGACACAGACAGAGATACAGACACGGAACGACACTCCGACCCAGATaaagac > 2:21104/1‑136 (MQ=18) tcagattcagatagcgactcagattcagaCAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCa < 1:255227/141‑1 (MQ=255) tcagatagcgactcagattcagaCAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCg > 1:24094/1‑141 (MQ=255) cagatagcgactcagattaagaCAACGACGCAGACAGAGACTCAGACTCAGATAGCGAGTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGCAAACGACCCAGACGCAGAGACAGAGTCAGacccag > 2:61385/1‑136 (MQ=14) gactcagattcagaCAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCgac < 1:217948/141‑1 (MQ=255) cagcgattcagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGAGTCGGATAGCGACTGAGACTCAGATac > 1:131717/1‑140 (MQ=255) tcagacagcgaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCgactca > 1:224539/1‑51 (MQ=255) | ACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAG > USA300TCH1516_ALE/613789‑614057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |