BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 2352	91 (0.960)	8 (0.020)	3/258	11.9	1.7%	intergenic (+132/+36)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
*	?	NC_012417	= 1963	816 (1.000)	8 (0.020)	3/258	11.9	1.7%	intergenic (+196/+130)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 874 total aligned reads displayed.

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACC  >  NC_012417/1824‑2103

tcttATTGGTGTTTTTGGTTACTTTTTGTTTTTCTATAAAGATGATGCTGTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaag                                                                                                                                             <  2:75473/138‑1 (MQ=255)

tacgaTTGGTGGTGTTGGCTACTTTTTGTTTTTCTATAAAGATGATGCTTTTTACGAGATGGAAGAGAAATATGATTATCATGACGATAATAAACAATAGACGACGCATTTATGCCGAGTAGATTTATTGATGTTGagaag                                                                                                                                             <  2:328588/137‑1 (MQ=255)

 tatATTTGTGTTGTTGCAGACTTTTTTGTTTTCTATAAAGATGATGTTTTTGACGAGATGGAAGATAAATATGAGTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGagaaga                                                                                                                                            <  2:4918/139‑1 (MQ=38)

      tGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGGTGATAGAAAAATATGATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                                       <  1:243061/141‑1 (MQ=255)

         tgttgtTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                                    <  2:300657/141‑1 (MQ=255)

         tgttgtTGATTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTaa                                                                                                                                    <  1:265484/141‑1 (MQ=255)

          gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAACACATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAc                                                                                                                                   <  1:168162/141‑1 (MQ=255)

           ttgttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAACATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACt                                                                                                                                  >  2:185306/1‑141 (MQ=255)

            tgttgCTTACTTTTTGTTTTTCTATAAATATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATTAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTa                                                                                                                                 >  2:41920/1‑141 (MQ=255)

             gttgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaa                                                                                                                                <  2:347308/141‑1 (MQ=255)

              ttgTTTACGTTTTGTTTGTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                                               <  2:33979/141‑1 (MQ=255)

               tgCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGACAAGAACCCTTAATTaaaa                                                                                                                              >  2:313554/1‑140 (MQ=255)

                 cTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGGTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAACTAAACtt                                                                                                                            >  1:42077/1‑141 (MQ=255)

                   tACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                                          <  2:139143/141‑1 (MQ=255)

                      tctttGTTTTTCTATAAAGATGTTGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATCAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                                       <  1:189456/139‑1 (MQ=255)

                       ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAACCATCTTACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                                      >  1:259478/1‑141 (MQ=37)

                           gTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGACTATCATTGAGATAATAACAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAAt                                                                                                                  >  2:145503/1‑141 (MQ=255)

                              tttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTc                                                                                                               >  2:227115/1‑141 (MQ=255)

                               ttCTATAAAGATGATGCTTTTGACGAGATGGAAGTAAAATATGATTATCATGAAGATATTAAAAAATAGACTACGCATTTATGTCTAGAAAATTTATTGATGTTGAGAAGAACCCTTCACTAAACTTGCAGACGactttct                                                                                                              >  2:80129/1‑135 (MQ=37)

                               ttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                              <  1:61770/141‑1 (MQ=255)

                               ttCTATAAAGATGATGATTTTGACGAGATGTAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCg                                                                                                              >  1:336977/1‑141 (MQ=255)

                                     aaaGATGATGCTTTTGACGAGATGGAAGAAAAATGTGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGACGCCGAATGTCGGCATAg                                                                                                        <  2:129679/141‑1 (MQ=255)

                                     aaaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAACATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAg                                                                                                        <  1:179649/141‑1 (MQ=255)

                                      aaGTTGATTATTTAGACGATATGAAAAAAAAAAATGATTAGCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                       <  2:161692/141‑1 (MQ=18)

                                      aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTACCTAAACTTACAGACGAATGTCATCATaac                                                                                                       >  2:239213/1‑139 (MQ=255)

                                      aaGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                       >  1:286686/1‑141 (MQ=255)

                                      aaGATGATACTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGc                                                                                                       <  1:137168/141‑1 (MQ=255)

                                       aGATTATGCTGTTGACGAGATGGAAGAAAAATATGATTGTCATGAAGATAATCAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                      <  2:173867/141‑1 (MQ=255)

                                       aGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCg                                                                                                      <  1:318227/141‑1 (MQ=255)

                                            atgCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGCCGAATGTCGGCATAGCGTGAGc                                                                                                 >  2:133200/1‑141 (MQ=255)

                                            atgCATTTGACGATATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGc                                                                                                 <  1:273687/141‑1 (MQ=255)

                                                ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCTGGGAAGATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                             >  1:82685/1‑141 (MQ=255)

                                                    gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                                         >  1:327442/1‑141 (MQ=255)

                                                    gACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAACTATTAAGc                                                                                         >  2:206520/1‑141 (MQ=255)

                                                     aCGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGcc                                                                                        >  2:334657/1‑141 (MQ=255)

                                                      cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                                       <  2:25817/141‑1 (MQ=255)

                                                      cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCg                                                                                       <  1:345533/141‑1 (MQ=255)

                                                      cGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAACTTATTGATGTTGAGAAGAACCCTTAACTAAACTTCCAGACGAATGACAGCACAGCCTGAGCTATTAAGCCg                                                                                       >  2:57833/1‑141 (MQ=21)

                                                         gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                    >  1:297530/1‑141 (MQ=255)

                                                         gaTGGAAGAAAAATATGATTAACATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                    <  2:169794/141‑1 (MQ=255)

                                                          aTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGGCCa                                                                                   >  2:192610/1‑141 (MQ=255)

                                                            ggAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCAtt                                                                                 >  1:71356/1‑141 (MQ=255)

                                                             gaagaaAAATATGATGATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                                <  1:106796/141‑1 (MQ=255)

                                                              aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGACGGCATAGCGTGAGCTATTAAGCCGACCATTCg                                                                               >  1:202196/1‑141 (MQ=255)

                                                               agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                              <  1:256516/141‑1 (MQ=255)

                                                               agaaAAATATAATTATCAGGAAGATAATAAAAAATAGACGACGCATTTATGCAGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                              <  2:28544/141‑1 (MQ=255)

                                                                gaaAAAAATGATTATCATGAAGATAATAAAAAATAGACGACGTATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACAAGTTTCCAGTTGTCGTGAGCTATTAAGCCGACCATTCGAc                                                                             <  2:197252/141‑1 (MQ=18)

                                                                aaaaaaTATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGAc                                                                             <  1:163390/140‑1 (MQ=255)

                                                                     atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                        >  1:322912/1‑141 (MQ=255)

                                                                     atatGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtt                                                                        >  1:249049/1‑141 (MQ=255)

                                                                        tGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATATATTAATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCAGCATAGCATGAGATATTAAGCCGACCACTCGACAAGTTTTg                                                                     >  2:212778/1‑141 (MQ=18)

                                                                          aTTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                                   >  2:53137/1‑141 (MQ=255)

                                                                             aTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTCCGCATGATTGCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAtt                                                                >  1:350743/1‑141 (MQ=17)

                                                                             aTCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAtt                                                                <  2:70514/141‑1 (MQ=255)

                                                                                 tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                              >  2:220067/1‑107 (MQ=255)

                                                                                 tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                              <  1:220067/107‑1 (MQ=255)

                                                                                 tGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGAATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                                                            >  2:250152/1‑141 (MQ=255)

                                                                                   aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAg                                                          <  2:35276/141‑1 (MQ=255)

                                                                                        aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                     <  1:310466/141‑1 (MQ=255)

                                                                                         ataaAATATGGACGTGGCATTTATGGCGAGAAAGTTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAGGAGTGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                    <  2:319554/141‑1 (MQ=11)

                                                                                         ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGCGCTATTAAGCCGACCATTCGACACGTTTTGGGATTGTTAAGGGTTcc                                                    >  1:196196/1‑141 (MQ=255)

                                                                                         ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTGTTGGGATTGTTAAGGGttgc                                                    >  2:291400/1‑139 (MQ=255)

                                                                                         ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATACGACACGTTTTGTGATTGTTAAGAGTTcc                                                    >  2:202979/1‑141 (MQ=255)

                                                                                         ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAACCGACCATTCGACAAGTTTTGGGATTGTTAAGAGTTcc                                                    >  2:265873/1‑141 (MQ=255)

                                                                                         ataaAAAAGAGACGACGCATTTACGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGTATTGTTAAGGGTTcc                                                    <  1:20704/141‑1 (MQ=255)

                                                                                           aaaaaaTAGACGAGGGATTGATGTCGAGAAAATTTATTGATGTTGAGAAGAACCCTGAACTAAACGTGCAGACGAATGTCGGCATAGCGGGAGCTATTAAGCCGACCATTCGTCAAGTTTTTGGATTGTTAAGGGTTCCGa                                                  <  1:143600/141‑1 (MQ=14)

                                                                                           aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACATGTTTTGGGATTGTTAAGGGTTCCgc                                                  >  1:279759/1‑140 (MQ=255)

                                                                                           aaaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtttaga                                                  >  1:175594/1‑137 (MQ=255)

                                                                                             aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                <  2:15153/141‑1 (MQ=39)

                                                                                             aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                <  1:303425/141‑1 (MQ=40)

                                                                                               aaTAGCCGAAGCGTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                              <  2:281858/141‑1 (MQ=255)

                                                                                               aaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAAAAGAACCCTGAACTAAACTTGCAGACGAATGTCGGAATAGCGTGAACTATTAAGCAGACCAATCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                                              >  2:180652/1‑141 (MQ=14)

                                                                                                aTAGACGACGCATTTATGACGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                                             <  2:100335/141‑1 (MQ=38)

                                                                                                   gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                          >  1:11820/1‑141 (MQ=35)

                                                                                                   gacgacGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAAc                                          <  1:109657/141‑1 (MQ=35)

                                                                                                    acgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                                         <  2:106033/141‑1 (MQ=34)

                                                                                                    acgaagCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACg                                         <  1:86400/141‑1 (MQ=18)

                                                                                                       acgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTCGGGAGTATGAAGAGTTCCGAGGCTCAACGTCa                                      >  1:331622/1‑141 (MQ=11)

                                                                                                        cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                     <  1:76341/141‑1 (MQ=32)

                                                                                                          cATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCGGACCATTCGACAAGTTTTGGGATTCTTAAGGGTTCCGAGGCTGAACGTCAATa                                   >  2:111132/1‑141 (MQ=12)

                                                                                                              tatgtagagaAAATTTATTGAGTTTGAGAAGAACGCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                               <  2:260565/135‑1 (MQ=11)

                                                                                                              tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                               <  1:101092/141‑1 (MQ=32)

                                                                                                               aTGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCa                              >  1:114364/1‑141 (MQ=32)

                                                                                                                 gCCGCGAAAATTTATTGATGTTGCGAAGACCCCTTAACTAAACTTGCAGACGCATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGACCCTTCCGCCTTCCGCGGTTCTTCGTCAATAAAGCAAt                            <  1:354535/141‑1 (MQ=11)

                                                                                                                 gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                            <  1:146993/141‑1 (MQ=32)

                                                                                                                  ccGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAtt                           >  1:185928/1‑141 (MQ=32)

                                                                                                                   cGAGAAAATTTATTGATGTTGAGAAGAACCCTTGACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                          <  2:232690/141‑1 (MQ=17)

                                                                                                                    gagaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAttag                         >  1:152075/1‑139 (MQ=17)

                                                                                                                     agaAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGa                        <  1:93595/141‑1 (MQ=31)

                                                                                                                            ttactGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGaataaata                 >  1:212556/5‑141 (MQ=14)

                                                                                                                             tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGTTTGTTAAGGGTTCCGAGGCTCAACGTCAATAATGCAATTGTAATAAATAg                >  1:46972/1‑141 (MQ=12)

                                                                                                                             tATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAACGCAATTGCaatcacgca                >  2:274461/1‑135 (MQ=0)

                                                                                                                                 gATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc            <  1:291962/141‑1 (MQ=35)

                                                                                                                                 gATGTTGAGAAGAACCCGTAACAACACTTGCAGTCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc            <  1:239801/141‑1 (MQ=255)

                                                                                                                                   tGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAATGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTa          <  1:130159/141‑1 (MQ=37)

                                                                                                                                   tGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTa          >  1:53882/1‑141 (MQ=37)

                                                                                                                                    gTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCCACGTACCTAAAGCAATTGGAATAAATAGTAGCTaa         >  2:87466/1‑141 (MQ=11)

                                                                                                                                      tGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAg       <  1:231652/141‑1 (MQ=39)

                                                                                                                                        agaagaACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa     <  1:224331/141‑1 (MQ=40)

                                                                                                                                           agaaCCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAcc  <  2:120977/141‑1 (MQ=255)

TCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACC  >  NC_012417/1824‑2103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.