New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2054896 =	41 (0.800)	4 (0.080)	4/248	NT	9.5%	intergenic (‑37/‑824)	purB/sspP	Adenylosuccinate lyase/Staphopain A
	?	USA300TCH1516_ALE	2054942 =	37 (0.760)					intergenic (‑83/‑778)	purB/sspP	Adenylosuccinate lyase/Staphopain A

AAAAAATAAAATAGAATGAGAATATACGGAAATTTTTTATACATTTATAACCAATTCTGTTAAACTGTGAAGAGTAGAGTTAAAAACGAACTTTTTGTTTATTTTTATTAAAAAATGTTCTGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2055022‑2054896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttttAACTCTACTCTTCACAGTTTAACAGAATTGGTTATAAATGTATAAAAAATTTCCGTATATTCTCATTCTATTTTATTTTTTACATTAATACAATTATCTATGGCAGATTAATACTGATTTCTAATTGTAAATGTT  >  USA300TCH1516_ALE/2054942‑2055076                                                                                                                                                                                                                                                                        AAAAAATAAAATAGAATGAGAATATACGGAAATTTTTTATACATATATATGCAAAGATATAAAAATGTGAAGAGTAAAGTTAAAAACGAACTTTTTGTTTATTTTTATTAAAAAATGTACTGTTTTTAACTCTACTCTTCA                                                                                                                           >  1:179199/1‑141         AAATAGAATGAGAATATACGGAAATTTTTTATACATTTATAACAAATTCTGTTAAAGTGTGAAGAGTAGAAATAAAAACGAACTTTTTATTTATTTTTATTAAAAAATTTTGTGTTTTTAACACTACTATAAACAGTTTAA                                                                                                                   >  1:354978/1‑141                                                     AATTTTGTTAAATTGTGAAGAGTAGAGTTAATATCGATTTTTTTGTTTATTTTTATTAAAAAATGTTATTTTTTTAACTCTACTCTTCACATTTTAACAGAATTGGTTATAAATGTATAAAAAATTTCCGTATATTCTCAT                                                                       <  2:433570/141‑1                                                            TTAAACTGTAAAAAGTAGAGTTAAAAACGAATTTTTTTTTTATTTTTATTAAAAAATGTTCTGTTTTTAACTCTACTCTTCACAGTTTAACAGAATTGGTTATAAATGTATAAAAAATTTCCGTATATTCTCATTCTATTT                                                                <  2:354978/141‑1                                                                                                                          tTTTTTAACTCTACTCTTCACAGTTTAACAGAATTGGTTATAAATGTATAAAAAATTTCCGTATATTCTCATTCTATTTTATTTTTTACATTAATACAATTATCTATGGCAGATTAATACTGATTTCTAATTGTAAATGTT  <  2:594499/140‑1                                                                                                                                                                                                                                                                        AAAAAATAAAATAGAATGAGAATATACGGAAATTTTTTATACATTTATAACCAATTCTGTTAAACTGTGAAGAGTAGAGTTAAAAACGAACTTTTTGTTTATTTTTATTAAAAAATGTTCTGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2055022‑2054896 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttttAACTCTACTCTTCACAGTTTAACAGAATTGGTTATAAATGTATAAAAAATTTCCGTATATTCTCATTCTATTTTATTTTTTACATTAATACAATTATCTATGGCAGATTAATACTGATTTCTAATTGTAAATGTT  >  USA300TCH1516_ALE/2054942‑2055076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.