New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 3069631 (0.350)4 (0.000) 4/246 NT 1.3% intergenic (‑395/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 3118 0 (0.000)intergenic (‑444/–) USA300HOU_RS14900/– hypothetical protein/–
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2121 total aligned reads displayed.

TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2929‑3125
                                                                                                                                            |                                                                                                                                             
ttttGAAACGAGTGTGAACGAGTTTTTTCTTGTCTTGATACTATATAGAAATAAATCGAGGTGTTATATAGAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                               <  2:622102‑M1/141‑1 (MQ=255)
ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAA                                                                                                                                               >  1:112998‑M1/1‑141 (MQ=255)
  ttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAATGTGTTTTTGTTCGTGAACCGAAAATTTGCCAATAAAAAAc                                                                                                                                             >  2:446815/1‑141 (MQ=39)
    gAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTAAAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcac                                                                                                                                           >  1:19738/1‑139 (MQ=255)
     aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAAcccc                                                                                                                                          <  1:379722/141‑1 (MQ=255)
        cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGt                                                                                                                                       <  1:574382/141‑1 (MQ=255)
        agAGGGTGAACGAGTTTCTTTTTTTATTGATATTATATATAAATAATTATATTTTATATATATAGATGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGt                                                                                                                                       <  2:346163/140‑1 (MQ=255)
         gAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGtt                                                                                                                                     <  1:42219/141‑1 (MQ=255)
          aGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTta                                                                                                                                    >  1:429726/1‑141 (MQ=255)
          aGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTta                                                                                                                                    <  1:520870/141‑1 (MQ=255)
             gtgAACGAGTTTCTTCTTGTCTTGATACTATATAGACATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTatat                                                                                                                                 >  1:248426/1‑141 (MQ=255)
                aatgAGTTTCTTCTTGTCTGGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTAtattat                                                                                                                              <  2:197602/138‑1 (MQ=255)
                  cGAGTTTCTTCTTGTCTTGATACTATATCGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATAttatta                                                                                                                            >  1:292183/1‑141 (MQ=255)
                     ttttCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAgg                                                                                                                         <  1:14415/140‑1 (MQ=255)
                     gTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAgg                                                                                                                         >  2:244024/1‑141 (MQ=255)
                         cttcttGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTc                                                                                                                     <  1:101086/141‑1 (MQ=255)
                          ttcttGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAACGTGTCg                                                                                                                    >  2:595021/1‑141 (MQ=255)
                               gtcttgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTAGAATCt                                                                                                               >  1:485580/1‑141 (MQ=255)
                                  ttgATAGTGTATAGAAATAACTCGATTTTATATATATAGCTGTAACGGTTGATAATACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTaa                                                                                                            <  2:226567/141‑1 (MQ=255)
                                   tgATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTaaa                                                                                                           <  2:42434/141‑1 (MQ=255)
                                    gATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAaat                                                                                                          <  1:122511/141‑1 (MQ=255)
                                        cTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAataata                                                                                                      <  1:62961/141‑1 (MQ=255)
                                          atagaGAAATAAGTCGATAATATATATAGAGATGTAATTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACt                                                                                                    <  2:550528/141‑1 (MQ=255)
                                           aataGAAATAACACGATTTTATATATATAGCTGTAATTGTTGATAATACAGTTTTTAAACGTTTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTg                                                                                                   <  2:368266/140‑1 (MQ=255)
                                            ataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTGAGGTGTCGAATCTTAGATGATCCTgg                                                                                                  >  1:343250/1‑141 (MQ=255)
                                            ataGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTgg                                                                                                  <  2:213820/141‑1 (MQ=255)
                                             taGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTggg                                                                                                 >  1:616953/1‑141 (MQ=255)
                                             taGAAATAACTCGATTTTATAAATATAGGTGTAACTATTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTggg                                                                                                 <  2:70751/141‑1 (MQ=255)
                                             taGAAATAACTCGAATTTATATACCTCATCGTCAGTGTTGATATTAAAGTGTTTAAACGTATCTTCGTAGGTAAGGGGAAAATTTGAGTATAGATAACCCCAATTGTATTTTTAAGGTGTCGAATCTTAAATAATGTTggg                                                                                                 >  2:11452/1‑141 (MQ=255)
                                               gAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTggggg                                                                                               <  1:508656/141‑1 (MQ=255)
                                                 aaTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTc                                                                                             >  1:1540/1‑141 (MQ=255)
                                                  aTAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAATCCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCt                                                                                            >  1:391762‑M2/1‑140 (MQ=255)
                                                   tAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtt                                                                                           <  1:75091‑M2/141‑3 (MQ=255)
                                                     aCTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                         <  1:583780‑M2/141‑5 (MQ=255)
                                                     aCTCGAATTTATATATAGAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCTCAGTTATATTATTAAGATGTCGAATCTTAAATAATACTGGGGGTCtttt                                                                                         <  2:235015‑M2/141‑5 (MQ=255)
                                                        cGATTTTATATATATAGTTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCtttttat                                                                                      <  1:164312‑M2/141‑8 (MQ=255)
                                                         gATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATa                                                                                     <  1:210435‑M2/141‑2 (MQ=255)
                                                          aTTTTATATATATAGCTGTAACTGTCGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGTGTCTTTTTATat                                                                                    <  1:641245‑M2/141‑3 (MQ=255)
                                                           ttttATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatg                                                                                   >  1:478704‑M2/1‑138 (MQ=255)
                                                               atatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaat                                                                               <  1:533941‑M2/141‑8 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                              >  2:632561‑M2/1‑133 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                              >  2:51842‑M2/1‑133 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaata                                                                              <  1:605036‑M2/141‑9 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTATTTTTATatgcacta                                                                              <  2:29708‑M2/141‑9 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATAATGGGTGTCTTTTTATatgtaata                                                                              <  2:528579‑M2/141‑9 (MQ=255)
                                                                tatatataGCTGTAACTGTTGATATTACAGTGTTTAAAAGTGTTTTTTTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGATGTCGAATCTTAAATAATACTGGGAGTCTTTTTATatgcaata                                                                              <  2:139863‑M2/141‑9 (MQ=255)
                                                                 atatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAACCCACAAGTATAGATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatat                                                                             <  1:468068‑M2/141‑10 (MQ=255)
                                                                  tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGTTCTTTTTATatgcaatata                                                                            <  2:327462‑M2/141‑11 (MQ=255)
                                                                  tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                            <  2:373602‑M2/141‑11 (MQ=255)
                                                                  tatataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatata                                                                            >  1:360134‑M2/1‑131 (MQ=255)
                                                                     ataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata                                                                         >  1:320070‑M2/1‑128 (MQ=255)
                                                                     ataGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataata                                                                         >  2:168578‑M2/1‑128 (MQ=255)
                                                                      aagCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatac                                                                        >  2:84192‑M2/2‑127 (MQ=255)
                                                                           gTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactacta                                                                   <  1:543871‑M2/141‑20 (MQ=255)
                                                                           gTAAAGGTGGATAAAACAGTGATTAAACGTGTTTTTGTGCAGGAAAGGAAAATTGGACAATAAAAAACCCCAGTTATATTATTAAGTTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactacta                                                                   >  2:607507‑M2/1‑122 (MQ=255)
                                                                             aaCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactaga                                                                 <  1:310402‑M2/141‑22 (MQ=255)
                                                                             aaCTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatacaatataatactactaga                                                                 <  2:398104‑M2/141‑22 (MQ=255)
                                                                                  ttGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtat                                                            >  1:238238‑M2/1‑115 (MQ=255)
                                                                                  ttGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAAACTTAAATAATAATCGGGGCCGACCAAGatgcaatataatactactagaagtat                                                            <  1:88837‑M2/141‑27 (MQ=255)
                                                                                   tGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGTGGTCTTTTTATatgcaatataatactactagaagtaaa                                                           <  2:149664‑M2/141‑28 (MQ=255)
                                                                                   tGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtata                                                           <  1:132894‑M2/141‑28 (MQ=255)
                                                                                     atatTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataac                                                         <  1:562007‑M2/141‑30 (MQ=255)
                                                                                       atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAGTAAAAAACCCAAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTATTGAgtataatataatactactagaagtataaccg                                                       >  2:558710‑M2/1‑110 (MQ=255)
                                                                                       atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccg                                                       >  1:30274‑M2/1‑110 (MQ=255)
                                                                                       atTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccg                                                       >  2:476250‑M2/1‑110 (MQ=255)
                                                                                         tACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaa                                                     <  2:501382‑M2/141‑34 (MQ=255)
                                                                                              tgtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGATAATAAAAAACCCCAGTTATATTATTAAGGTTTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatca                                                >  2:287594‑M2/1‑103 (MQ=255)
                                                                                              tgtTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataagcgaaaatca                                                <  1:96432‑M2/141‑39 (MQ=255)
                                                                                                tttAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaag                                              >  1:454572‑M2/1‑101 (MQ=255)
                                                                                                     aCGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataat                                         <  2:336827‑M2/141‑46 (MQ=255)
                                                                                                        tgtTTTTGTGAGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaa                                      >  2:274777‑M2/1‑93 (MQ=255)
                                                                                                         atatttgttCGTTAAAGAAAAAGTAGACAAAAAAAAACCTCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGAGAGTCTTTTTATatgaaatataatactactagaagtataaccgaaaagtaagataataaaa                                     >  2:184285‑M2/4‑92 (MQ=255)
                                                                                                             ttGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGAGGTCTTTTTATatgcaatataatactactagaagtataaacgaaaatcacgataataaaacgtt                                 <  2:38768‑M2/141‑54 (MQ=255)
                                                                                                                        aGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatga                      >  1:412821‑M2/1‑77 (MQ=255)
                                                                                                                             aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaa                 >  1:33293‑M2/1‑72 (MQ=255)
                                                                                                                             aaTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGAACTTTTTATatgcaatataatactactagaagtataaccgaaaatcaacatcaaataaagttaaaacatatgacgaaa                 <  1:495159‑M2/141‑70 (MQ=255)
                                                                                                                              aTTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAACTAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaagcaagataataaaacgttacaatagatgacgccaa                <  1:266360‑M2/141‑71 (MQ=255)
                                                                                                                              aTTTGACAATAAAAAACCCCAATTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaa                <  1:181848‑M2/141‑71 (MQ=255)
                                                                                                                                 tGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg             >  2:409138‑M2/1‑68 (MQ=255)
                                                                                                                                 tGAAAATAAAAAACCCCAGTTATATTATTAAGGTATCTAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagcagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtg             >  2:108482‑M2/1‑68 (MQ=255)
                                                                                                                                     gatAAAAAgacccctagtattatttaagattctacaccttaataatataactggggttttttattgtcaaatttttctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatc          <  2:128979‑M1/140‑134 (MQ=255)
                                                                                                                                      aTAAAAAgaccccgagtattatttaagattcgacaccttaataatataactgtggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcg         <  2:584331‑M1/141‑135 (MQ=255)
                                                                                                                                      aTAAAAAgacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcactcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaattt         >  2:45796‑M1/1‑7 (MQ=255)
                                                                                                                                      aTAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaa        <  1:595683‑M2/141‑79 (MQ=255)
                                                                                                                                      aTAAAAAACC‑‑AGTTATATTATTAAGGTGTCGAATCGTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaaca      >  2:571778‑M2/1‑61 (MQ=255)
                                                                                                                                        aaaaagaccctgattattatttaatattcgacatcttaataatataactggggttttttattgtcaaatttttctttcacgcaaaaaaacacttttaaacactgtaatatcaacagttacagctatatatataaaatcgag       <  2:487597‑M1/141‑137 (MQ=255)
                                                                                                                                        aaaaagaccctcagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag       <  2:434005‑M1/141‑137 (MQ=255)
                                                                                                                                        aaaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatctcaacagttacagctatatatataaaatccat       >  2:25941‑M1/1‑5 (MQ=255)
                                                                                                                                        aaaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag       >  1:55369‑M1/1‑5 (MQ=255)
                                                                                                                                        aaaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag       >  2:305920‑M1/1‑5 (MQ=255)
                                                                                                                                        aaaaagacccccagtattatttaagattcgacaccttaataatataaccggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag       <  1:444399‑M1/141‑137 (MQ=255)
                                                                                                                                        aaaaagaccaccaggattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgag       <  1:400887‑M1/141‑137 (MQ=255)
                                                                                                                                         aaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagt      >  1:353237‑M1/1‑4 (MQ=255)
                                                                                                                                         aaaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagt      <  1:370390‑M1/141‑138 (MQ=255)
                                                                                                                                         aaaaaCCCCAGTTATATTATTATGCACGCGAAGCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataacagaaaatcaagataataaaacgttaaaagatatgacgagaaaagggaaacaa     <  2:359121‑M2/141‑82 (MQ=255)
                                                                                                                                          aaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcaccaaaacacgtttaaacactgtaatatcaacagttacatctatatatataaattcgcgtt     >  2:315914‑M1/1‑3 (MQ=255)
                                                                                                                                          aaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagtt     <  1:172866‑M1/141‑139 (MQ=255)
                                                                                                                                          aaagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagtt     <  1:281181‑M1/141‑139 (MQ=255)
                                                                                                                                           aagacccccagtattatttaagattcgacaccttaataatataactggggttttttattgtcaaattttcctttcacgcacaaaaacacgtttaaacactgtaatatcaacagttacagctatatatataaaatcgagtta    >  2:539237‑M1/1‑2 (MQ=255)
                                                                                                                                            aaCGCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTATatgcaatataatactactagaagtataaccgaaaatcaagataataaaacgttaaaagatatgacgaaaagtgggaaacaacgc  >  1:221625‑M2/1‑57 (MQ=255)
                                                                                                                                            |                                                                                                                                             
TTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTTAAACGTGTTTTTGTGCGTGAAAGGAAAATTTGACAATAAAAAACCCCAGTTATATTATTAAGGTGTCGAATCTTAAATAATACTGGGGGTCTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2929‑3125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.