mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 81 | N→G | 100% | intergenic (–/‑151) | – / → repA | –/replication protein A |
| JC | CP000731 | 6,552 | +28 bp | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| RA | CP000731 | 25,663 | Δ1 bp | 100% | coding (316/333 nt) | USA300HOU_pUSA300HOUMR0031 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 111,512 | A→G | 32.0% | S194S (TCA→TCG) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 111,516 | C→A | 35.9% | Q196K (CAA→AAA) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 643,640 | A→G | 21.3% | intergenic (‑288/+261) | yjjP_1 ← / ← USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| RA | USA300TCH1516_ALE | 643,642 | T→A | 21.5% | intergenic (‑290/+259) | yjjP_1 ← / ← USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| RA | USA300TCH1516_ALE | 643,643 | G→A | 20.8% | intergenic (‑291/+258) | yjjP_1 ← / ← USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| RA | USA300TCH1516_ALE | 643,644 | A→T | 20.7% | intergenic (‑292/+257) | yjjP_1 ← / ← USA300HOU_RS03070 | Inner membrane protein YjjP/Putative heme‑dependent peroxidase |
| RA | USA300TCH1516_ALE | 1,294,024 | A→G | 23.7% | D225G (GAT→GGT) | truB → | tRNA pseudouridine synthase B |
| RA | USA300TCH1516_ALE | 1,416,458 | A→T | 100% | I216N (ATT→AAT) | oppD_4 ← | Oligopeptide transport ATP‑binding protein OppD |
| RA | USA300TCH1516_ALE | 1,513,930 | A→T | 100% | L413F (TTA→TTT) | USA300HOU_RS07375 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 1,646,189 | G→C | 100% | A155G (GCA→GGA) | ypdF ← | Aminopeptidase YpdF |
| RA | USA300TCH1516_ALE | 1,744,428 | T→C | 37.0% | K82E (AAA→GAA) | apt ← | Adenine phosphoribosyltransferase |
| RA | USA300TCH1516_ALE | 2,010,363 | C→T | 100% | C146Y (TGT→TAT) | USA300HOU_RS10125 ← | Putative multidrug export ATP‑binding/permease protein |
| RA | USA300TCH1516_ALE | 2,279,705 | G→A | 100% | A943V (GCA→GTA) | ebh_3 ← | Extracellular matrix‑binding protein ebh |
| RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1789630 = | 12 (0.600) | 3 (0.160) | 3/238 | NT | 25.0% | intergenic (‑111/+59) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| ? | USA300TCH1516_ALE | 1789673 = | 7 (0.380) | intergenic (‑154/+16) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase | |||||