| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1299540 | 50 (0.760) | 4 (0.060) | 3/252 | NT | 7.1% | coding (1201/1674 nt) | rnj2 | Ribonuclease J 2 |
| ? | USA300TCH1516_ALE | = 1299564 | 56 (0.880) | coding (1225/1674 nt) | rnj2 | Ribonuclease J 2 | |||||
CTGGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1299400‑1299540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacCTGCTTCAGCTGCTAGCTTCGCATGTGCTATCTGCATTTTAAATTCACCTTGTACAGGAATAAAGTATTCAGGTTTCA < USA300TCH1516_ALE/1299564‑1299487 CTGGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCA < 1:456329/140‑1CTGGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCA < 1:78827/140‑1 TGGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGTAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCAC < 1:672142/140‑1 AATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCACCTGCTTCAGCTGCTAGCTT < 1:46376/140‑1 AATAAAAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGCTGATTAATATTATGAAACCTAAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCACCTGCTTCAGCTGCTAGCTT < 1:40326/140‑1 GTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCACCTGCTTCAGCTGCTAGCTTCGCATGTGCTATCTGCATTTTAAAT > 2:208406/1‑140 TAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCACCTGCTTCAGCTGCTAGCTTCGCATGTGCTATCTGCATTTTAAATTCACCCTGTACAGGAATAAAGTATTCAGGTTTCA < 1:208406/140‑1 CTGGCGCACATATTATTCCAAATAACAAAAAGATTCATGCTTCAAGTCATGGTTGCATGGAAGAATTAAAAATGATGATTAATATTATGAAACCTGAATACTTTATTCCTGTACAAGGTGAATTTAAAATGCAGATAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1299400‑1299540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacCTGCTTCAGCTGCTAGCTTCGCATGTGCTATCTGCATTTTAAATTCACCTTGTACAGGAATAAAGTATTCAGGTTTCA < USA300TCH1516_ALE/1299564‑1299487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |