New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1551802 =	64 (0.980)	4 (0.060)	4/246	NT	6.2%	coding (672/1461 nt)	ebpS	Elastin‑binding protein EbpS
	?	USA300TCH1516_ALE	1551860 =	61 (0.980)					coding (614/1461 nt)	ebpS	Elastin‑binding protein EbpS

TCAGAAACATCAAAAAATGAACATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/1551945‑1551802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGC  >  USA300TCH1516_ALE/1551860‑1551996                                                                                                                                                                                                                                                                                           TCAGAAACATCAAAAAATGAACATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGC                                                                                                                                               <  2:780610/140‑1  CAGAAACATCAAAAAATGAACATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCT                                                                                                                                              <  1:130394/140‑1                  TGAACATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCTGCTGCTTTTTTACCAT                                                                                                                              >  1:600354/1‑140                      CATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGATAAAAAAGCAGCAGCGATTGGTGCTGGAACAGCAGGTGTTACGGGTGCGGCGGGTGCAATGGCTGCTGCTTTTTTACCATTATG                                                                                                                          >  1:411386/1‑140                                                                      CATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATCATTATCATG                                                                          <  2:411386/140‑1                                                                          ATGGTAAAAAAGCAGCAGCTATTGGTGTTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCA                                                                      <  2:600354/140‑1                                                                                                                                              GCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGC  <  1:780610/140‑1                                                                                                                                                                                                                                                                                           TCAGAAACATCAAAAAATGAACATGATAATGATTCTGTAAAACAAGATCAAGATGAACCTAAAGAACATCATAATGGTAAAAAAGCAGCAGCTATTGGTGCTGGAACAGCAGGTGTTGCAGGTGCAGCTGGTGCAATGGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/1551945‑1551802 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGC  >  USA300TCH1516_ALE/1551860‑1551996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.