New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1551802 =	64 (0.980)	4 (0.060)	4/246	NT	6.2%	coding (672/1461 nt)	ebpS	Elastin‑binding protein EbpS
	?	USA300TCH1516_ALE	1551860 =	61 (0.980)					coding (614/1461 nt)	ebpS	Elastin‑binding protein EbpS

CGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGCTTC  >  USA300TCH1516_ALE/1551721‑1551999                                                                                                                                            |                                                                                                                                             cGCTTTATCCTCAGTCTACTTATTTGCCTTGCCATAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTCGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTTTTCCAGCACCAATAgctgctg                                                                                                                                              <  2:32094/140‑1 (MQ=255)   cTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTCTTGTTTTGAGCGTCATCTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAgctgctgct                                                                                                                                            <  1:383804/140‑1 (MQ=255)      tATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGCATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCtttt                                                                                                                                         >  2:672056/1‑140 (MQ=255)      tATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTATCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCATGCACCAATAGCTGTGGCtttt                                                                                                                                         >  2:805389/1‑140 (MQ=255)       aTCCTCAGTCGAGTGATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGACTGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTCCTGTTCCAGCACCAACACCTTCTGCtcttt                                                                                                                                        >  2:794240/1‑140 (MQ=255)          cTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATGTGAATGTTTCTTAGCGTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTAc                                                                                                                                     <  1:486165/140‑1 (MQ=255)           tCAGTCGAGTTATTCGCGTTGCCAGGATTACTGTTGTTTTCATTGTCATTTGATTGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTAcc                                                                                                                                    <  2:776933/140‑1 (MQ=255)             tgaacatgataatgattctgtaaaacaagatcaagatgaacctaaagaacatcataatggtaaaaaagcagcagctattggtgctggaacagcaggtgttgcaggtgcagctggtgcaatggctgctGCTTTTTTACCAt                                                                                                                                  >  1:600354‑M2/128‑140 (MQ=255)             tgaacatgataatgattctgtaaaacaagatcaagatgaacctaaagaacatcataatggtaaaaaagcAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAACACCAATAGCTGCTGCTTTTTTACCAt                                                                                                                                  <  2:600354‑M1/71‑1 (MQ=255)                cGAGTTATTCGCCTTGCCAGACTTACTTTTGTTTTGAGCGTCATTCGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTat                                                                                                                               <  2:436445/140‑1 (MQ=255)                cGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTCTAGTAGCGGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTat                                                                                                                               <  2:284250/140‑1 (MQ=255)                cGAGGTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTat                                                                                                                               >  2:139795/1‑140 (MQ=255)                 gAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTatg                                                                                                                              >  1:299542/1‑140 (MQ=255)                 catgataatgattctgtaaaacaagatcaagatgaacctaaagaacatcataatggtaaaaaagcAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTatg                                                                                                                              <  2:411386‑M1/75‑1 (MQ=255)                 catgataatgattctgtaaaacaagatcaagatgaacctaaagaacatcataatgataaaaaagcagcagcgattggtgctggaacagcaggtgttacgggtgcggcgggtgcaatggctgctGCTTTTTTACCATTatg                                                                                                                              >  1:411386‑M2/124‑140 (MQ=255)                  aGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGTGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCGTTGCACCAGCTGCACCTGCACCACTTGCTGTTCCAGCACCAATTGCTGATGCTTTTTTATCACTttga                                                                                                                             >  2:350504/1‑140 (MQ=255)                  aGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAACTGCTGCTTTTTTACCATTatga                                                                                                                             >  2:444064/1‑140 (MQ=255)                   gTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTatgat                                                                                                                            >  2:6941/1‑140 (MQ=255)                       ttCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTc                                                                                                                        >  1:571443/1‑140 (MQ=255)                        tCGCCTTGCCAGAATTACTTTTGTTGCCCGCGTCGTTTGAGTGTGTCTTAGCTTTAGAAGCAGCCATTGCACGAGCTGCACCTGCAACACCTGCTGTTCCAGCACCACTAGCTGCTGCTTTTCTACCATTATGATGTTca                                                                                                                       >  2:489170/1‑139 (MQ=255)                               gCCTGAATTACTTTTGTTTTGATCGTTATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGt‑t                                                                                                               <  2:464239/140‑1 (MQ=255)                                     aTTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatctt                                                                                                         <  1:138129/140‑1 (MQ=255)                                      ttACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttg                                                                                                        <  1:759430/140‑1 (MQ=255)                                      ttACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCAAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttg                                                                                                        <  1:628757/140‑1 (MQ=255)                                        aCTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttgat                                                                                                      >  1:458866/1‑140 (MQ=255)                                         cTTTTGTTTTGAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttgatc                                                                                                     <  2:136127/140‑1 (MQ=255)                                          ttttgttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGGTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttgatct                                                                                                    >  2:284507/1‑140 (MQ=255)                                            ttgttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCatcttgatcttg                                                                                                  >  1:231298/1‑140 (MQ=255)                                               ttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGttt                                                                                               <  1:182284/140‑1 (MQ=255)                                                   gAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCTTCTTGATCTTGTTTTACa                                                                                           >  1:277639/1‑140 (MQ=255)                                                   gAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACa                                                                                           >  2:671079/1‑140 (MQ=255)                                                   gAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACa                                                                                           <  1:125894/140‑1 (MQ=255)                                                        tCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGTTCTTGTTTTACAGAATc                                                                                      >  2:118826/1‑140 (MQ=255)                                                            ttGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCCTTTCTTCCTTTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATGATTa                                                                                  >  1:150524/1‑140 (MQ=255)                                                                aTGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCGGCACCAATAGCTGCTGCTTTTTTACCATTATGATGGTCTTTAGGT‑TCATCTTGATCTTGTTTCACAGAAACATTATCAt                                                                              >  2:650522/1‑140 (MQ=255)                                                                 tGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTAATAAGAGGTTACAGAATCATTATCATg                                                                             <  2:250744/140‑1 (MQ=38)                                                                 tGTCTCTTCGCTTTAGAACCAGCCATTGCTCCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATg                                                                             <  2:691045/140‑1 (MQ=255)                                                                 gggttCTTAGCTGTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATg                                                                             <  1:108914/137‑1 (MQ=255)                                                                 cataatggtaaaaaagcagcagctattggtgctggaacagcaggtgttgcaggtgcagctggtgcaatggctgctGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATg                                                                             <  2:411386‑M2/65‑1 (MQ=255)                                                                 cataatggtaaaaaagcAGCAGCCATTGCACCCGCCGCACCCGTAACACCTGCTGTTCCAGCACCAATCGCTGCTGCTTTTTTATCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATg                                                                             >  1:411386‑M1/18‑140 (MQ=255)                                                                  ttttCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCATCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGt                                                                            <  2:508020/139‑1 (MQ=255)                                                                  gTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGt                                                                            <  1:11838/140‑1 (MQ=255)                                                                  gTTTCTTAGCGTCAGAAGCAGCCATTGCAGCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGt                                                                            <  2:347035/140‑1 (MQ=255)                                                                     tCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCa                                                                         <  1:6941/140‑1 (MQ=255)                                                                     atggtaaaaaagcagcagctattggtgttggaacagcaggtgttgcaggtgcagctggtgcaatggctgctGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCa                                                                         <  2:600354‑M2/69‑1 (MQ=255)                                                                     atggtaaaaaagcAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCa                                                                         >  1:600354‑M1/14‑140 (MQ=255)                                                                          gCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTT‑TTGATATGCCATCTGGGGCTTGTTTTACAGAATACTTATCATGTTTAttttg                                                                    >  1:584027/1‑139 (MQ=255)                                                                                     AGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTg                                                         <  1:130394‑M1/140‑1 (MQ=255)                                                                                      GCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGa                                                        <  2:780610‑M1/140‑1 (MQ=255)                                                                                        cATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGAtt                                                      >  2:723919/1‑140 (MQ=255)                                                                                        cATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTACCGCTTTGTTACCATTATGATGTCCTTTAGGT‑TCATCTTGATCTTGTTTTCCAGACTCATTATCATGTTAATTTTTTGCTGTTTCTGAtt                                                      >  2:98566/1‑140 (MQ=255)                                                                                         aTTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTCGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTg                                                     >  2:770900/1‑140 (MQ=255)                                                                                            gCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTCCAGAATCATTATCATGTGCATTTTTTGATGTTTCTGATTGGtt                                                  >  2:521107/1‑140 (MQ=255)                                                                                            gCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGtt                                                  >  1:551375/1‑140 (MQ=255)                                                                                            gCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGtt                                                  >  2:682312/1‑140 (MQ=255)                                                                                             ctgcAGCGGCACCTGCGACACCTGCTTTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TTATCTTGATCGTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTa                                                 <  2:136173/137‑1 (MQ=255)                                                                                              aacAGCTGCACCTGCAACACCTGCTGTTCCAGGAGCAATAGCTGCTGCTTTTTTAACATTATGATGTTCTTTAGGT‑GCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAg                                                <  1:624410/138‑1 (MQ=255)                                                                                                  gCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTAATTTTTGTGTGCTTTTGATTGGCTAGCAcc                                            >  1:582303/1‑140 (MQ=255)                                                                                                   cTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCt                                           >  1:145985/1‑140 (MQ=255)                                                                                                        ccTGTAACACCTTCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCtgttgt                                      <  2:36218/140‑1 (MQ=255)                                                                                                        ccTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCtgttgt                                      <  1:671079/140‑1 (MQ=255)                                                                                                        ccTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCtgttgt                                      >  1:130494/1‑140 (MQ=255)                                                                                                         cTGCATCACCTGCTGTTCGAGCACCAATTGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTa                                     <  2:18360/140‑1 (MQ=255)                                                                                                         cTGCAACCCCTGCTGTTCCAGCACCACTAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTa                                     <  1:260564/140‑1 (MQ=255)                                                                                                          tGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTaa                                    <  2:508407/140‑1 (MQ=255)                                                                                                            cAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTaaaa                                  <  1:139795/140‑1 (MQ=255)                                                                                                                 ccTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTCGCACCTGTTGTCAAATATgg                             >  2:547435/1‑140 (MQ=255)                                                                                                                      tgTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTACCC‑TCACACACCACGGCTTGGACAGAATCATTATCATGTTCAGTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAg                        <  1:796950/140‑1 (MQ=255)                                                                                                                       gTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGTTGTTTCTGATTGGTTAGCACCTGTTGTAAGATTTGGTTTAgg                       >  1:227557/1‑140 (MQ=255)                                                                                                                         tCCAGCAGCAATAGCTGCTGTTTTTTTATCATTATGATGTTCTTTAGGT‑TCATTTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTGTTGATGTTTCTGATTGGTTAGCACCTGTTGTAACATATGGTTTAGGtt                     <  2:20824/140‑1 (MQ=255)                                                                                                                         tCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGTTTTAGGtt                     >  2:779399/1‑140 (MQ=255)                                                                                                                           cAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGc                   >  1:676665/1‑140 (MQ=255)                                                                                                                            aGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCt                  <  1:10231/140‑1 (MQ=255)                                                                                                                                  aaTAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGAtt            <  1:284507/140‑1 (MQ=255)                                                                                                                                    tAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGt          <  2:232741/140‑1 (MQ=255)                                                                                                                                         gctGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGc     <  1:780610‑M2/137‑1 (MQ=255)                                                                                                                                            gctTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGCTTc  <  2:668519/140‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             CGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGT‑TCATCTTGATCTTGTTTTACAGAATCATTATCATGTTCATTTTTTGATGTTTCTGATTGGTTAGCACCTGTTGTAAAATATGGTTTAGGTTGCTGAGATTGTTCAGCTTC  >  USA300TCH1516_ALE/1551721‑1551999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.