BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2085296 =	72 (1.100)	17 (0.290)	15/230	NT	21.5%	coding (173/201 nt)	hlb_1	Phospholipase C
*	?	USA300TCH1516_ALE	= 2128343	60 (1.030)	17 (0.290)	15/230	NT	21.5%	coding (1/825 nt)	hlb_2	Phospholipase C

Only 100 of 112 total aligned reads displayed.

AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  USA300TCH1516_ALE/2085157‑2085434

aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGtttt                                                                                                                                            >  1:108230/1‑140 (MQ=255)

aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGtttt                                                                                                                                            >  1:603004/1‑140 (MQ=255)

aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGtttt                                                                                                                                            >  1:258238/1‑140 (MQ=255)

 acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg                                                                                                                                           <  2:693170‑M1/2‑1 (MQ=255)

  catccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGt                                                                                                                                          <  1:290400‑M1/3‑1 (MQ=255)

   atccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTa                                                                                                                                         <  2:339844‑M1/4‑1 (MQ=255)

     ccgtttattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATc                                                                                                                                       >  2:634660‑M1/135‑140 (MQ=255)

      tgtgtatcataatttgttagaagaaaaatttaaagaagagtaaaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATcc                                                                                                                                      >  2:191851‑M1/134‑140 (MQ=255)

      cgtgtattctcatttgttagaagaaaaatttaatgaagaggacatagaaacaactaaaacgatgtaatttatgtaatttagggacccattagggactccaaacccaatcaatactgttgttacaaggtttctaTGTAtca                                                                                                                                      <  2:287566‑M1/7‑2 (MQ=255)

       ttGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAAGTTATCGACCGTTTTGTATCCa                                                                                                                                     >  2:492188/1‑140 (MQ=255)

        tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggcctccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa                                                                                                                                    <  1:669012‑M1/9‑1 (MQ=255)

        tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaatgaatactgttggtacaaggtttgtgTGTatccga                                                                                                                                    <  1:515968‑M1/9‑3 (MQ=255)

         gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCaaa                                                                                                                                   >  2:23377/1‑140 (MQ=255)

          tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc                                                                                                                                  >  1:661506‑M1/130‑140 (MQ=255)

           attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt                                                                                                                                 >  1:302683‑M1/129‑140 (MQ=255)

           aaCACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACt                                                                                                                                 <  1:397215/140‑1 (MQ=255)

            ttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaccgactaaaattttagcaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg                                                                                                                                <  1:423464‑M1/13‑1 (MQ=255)

            acacTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTg                                                                                                                                >  2:333319/1‑140 (MQ=255)

                          aaaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACAt                                                                                                                  <  2:355813/140‑1 (MQ=255)

                                  tttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACCTTTAACATAAACTTAc                                                                                                          <  1:601936‑M1/35‑1 (MQ=255)

                                  tattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                          <  2:225046/140‑1 (MQ=255)

                                  tattaGCTGGTGAACTGACTGACAGTAGTGCCACAGCCGAATATAAGAACGATGATACTGATTTGACGTTCGTTAGTGATAACGTTTATATGTTATCGACCGTTTTGTAAGCAAACCAGAGACTTTTAACATAAAATTAc                                                                                                          <  2:398190/140‑1 (MQ=255)

                                     aatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTa                                                                                                       <  1:599420‑M1/38‑1 (MQ=255)

                                       gTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc                                                                                                     <  2:108230/140‑1 (MQ=255)

                                           gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTc                                                                                                 <  1:690935‑M1/44‑1 (MQ=255)

                                           gaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTc                                                                                                 >  1:340466‑M1/97‑140 (MQ=255)

                                              cACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa                                                                                              >  1:598921/1‑140 (MQ=255)

                                               aCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGACATAACTGTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaa                                                                                             >  1:628168/1‑140 (MQ=255)

                                                cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaa                                                                                            >  2:355439/1‑140 (MQ=255)

                                                 ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                           >  2:754529/1‑140 (MQ=255)

                                                     aaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                       <  1:518704‑M1/54‑1 (MQ=255)

                                                       aCAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc                                                                                     <  1:552332/140‑1 (MQ=255)

                                                          actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc                                                                                  <  2:377041‑M1/59‑1 (MQ=255)

                                                            aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                <  1:175855/140‑1 (MQ=255)

                                                            aGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat                                                                                <  1:171366/140‑1 (MQ=255)

                                                             gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTAACCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCata                                                                               <  1:508419/140‑1 (MQ=255)

                                                              tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa                                                                              >  2:302880/1‑140 (MQ=255)

                                                               gcaaaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTATTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                             <  2:29161/137‑1 (MQ=255)

                                                               gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat                                                                             <  1:783386/140‑1 (MQ=255)

                                                                  aaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATc                                                                          <  2:480410/140‑1 (MQ=255)

                                                                  aaaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATc                                                                          <  2:502293/140‑1 (MQ=255)

                                                                      gaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                      <  1:315469‑M1/71‑1 (MQ=255)

                                                                      gaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACCTATCATTCAAAAAGTAAAACAGCATAATATCAAgg                                                                      <  2:237359‑M1/71‑1 (MQ=255)

                                                                       agAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                     <  2:115263/139‑1 (MQ=255)

                                                                         aaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt                                                                   >  2:729430/1‑140 (MQ=255)

                                                                          aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAGACAGCATAATATCAAGGTTta                                                                  >  1:17302/1‑140 (MQ=255)

                                                                          aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                  <  1:403402/140‑1 (MQ=255)

                                                                          aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                  >  1:642580/1‑140 (MQ=255)

                                                                           tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAATAGTAAAACAGCATAATATCAAGGTTtat                                                                 <  2:15399/140‑1 (MQ=255)

                                                                            cTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAGATAAAATTACTTAGCATGCAAAAAATAAAAAAGCATAATATGAAGGtacaaa                                                                >  2:41344/1‑135 (MQ=255)

                                                                               taatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                             <  1:329981‑M1/80‑1 (MQ=255)

                                                                               taatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACt                                                             <  1:215981‑M1/80‑1 (MQ=255)

                                                                                gaaagaTGATACTGAATTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                            <  1:296911/140‑1 (MQ=255)

                                                                                 atttaaggatcaattaaggactacaaacccaataaatactgttgttataaggtgtctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACttt                                                           >  2:436280‑M1/59‑140 (MQ=255)

                                                                                  aagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                          <  2:258238/140‑1 (MQ=255)

                                                                                    gatgatACTGCTTTGAAGGTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTAGAACTttatc                                                        <  1:573854/140‑1 (MQ=255)

                                                                                    gatgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatc                                                        <  2:658183/140‑1 (MQ=255)

                                                                                       gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAACCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                     >  1:151897/1‑140 (MQ=255)

                                                                                       gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt                                                     >  1:17336/1‑140 (MQ=255)

                                                                                         tACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattat                                                   >  1:391732/1‑140 (MQ=255)

                                                                                          ccaattagggattccaaaaccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcattatc                                                  >  1:490031‑M1/50‑140 (MQ=255)

                                                                                           cTGATTTGAATTTACTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAACACAGCATAATATCAACCTTTATAACTttatcattatca                                                 <  1:767192/140‑1 (MQ=255)

                                                                                             gATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                               <  1:399274/140‑1 (MQ=255)

                                                                                               tttGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataa                                             >  2:322914/1‑140 (MQ=255)

                                                                                                  gAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAc                                          <  1:230108/140‑1 (MQ=255)

                                                                                                   aaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAcc                                         <  1:754529/140‑1 (MQ=255)

                                                                                                   aaGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAcc                                         <  1:333319/140‑1 (MQ=255)

                                                                                                         gttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCatat                                   >  1:373498/1‑140 (MQ=255)

                                                                                                         aaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCatat                                   <  2:424007‑M1/106‑1 (MQ=255)

                                                                                                            agtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTACCATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATCTCAAGGTTTATAACTTTCTCATTATCAATAATACCCCATatcaa                                >  1:54152/1‑140 (MQ=255)

                                                                                                             gtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaa                               >  1:361633/1‑140 (MQ=255)

                                                                                                              tCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaat                              <  1:492016/140‑1 (MQ=255)

                                                                                                                  aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATAtaaaataaaa                          <  2:633718/140‑1 (MQ=255)

                                                                                                                  aaCGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATAACTCATAtaaaataaaa                          >  2:459859/1‑140 (MQ=255)

                                                                                                                    ggTTTAGATGTTGGCGACCGGTTTGTATGCAAAGTGGAGACTTTTAACATAAAATTACTTATAATTGAAAAAGTAAAACAGCATCAGAGGGAGGTTTATAACTTTATCAGTATAAATAAGACCTCATATaaaataaaata                        <  2:742593/139‑2 (MQ=255)

                                                                                                                     gTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttt                       <  1:87830/140‑1 (MQ=255)

                                                                                                                      tttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttt                      <  2:698106/140‑1 (MQ=255)

                                                                                                                        tataTGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag                    <  2:603004/140‑1 (MQ=255)

                                                                                                                         atatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                   <  2:42453/140‑1 (MQ=255)

                                                                                                                         atatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                   <  1:685573/140‑1 (MQ=255)

                                                                                                                         atatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagg                   <  1:492188/140‑1 (MQ=255)

                                                                                                                          tatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCCTTCAAAAAGTAATACTTCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAACATAAAAttttagag                  >  2:169799/1‑138 (MQ=255)

                                                                                                                           atGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                 >  1:104770/1‑140 (MQ=255)

                                                                                                                             gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggact               >  2:674504/1‑140 (MQ=255)

                                                                                                                              ttATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAGttttagggactt              >  1:176516/1‑140 (MQ=255)

                                                                                                                              ttATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactt              >  2:764223/1‑140 (MQ=255)

                                                                                                                                caaggttgctaGGGATCCAAACGGGAGAGTGTGAACATAAAATTACTTAGCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt            >  2:601936‑M1/12‑140 (MQ=255)

                                                                                                                                   gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttag         <  1:471093/140‑1 (MQ=255)

                                                                                                                                   gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttag         >  2:248935/1‑140 (MQ=255)

                                                                                                                                    aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg        >  2:704025/1‑140 (MQ=255)

                                                                                                                                     ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg       >  2:559237/1‑140 (MQ=255)

                                                                                                                                     ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggg       <  2:635127/140‑1 (MQ=255)

                                                                                                                                     ccGTTTTGTATCCAAACTGCATACGCGCAACACGAGACTCCTTATCATTCAAAAAGTAAAACAGCACAAGAGCAATTATTGGAACATAAGCATGATCAATAATACCACATATAAAATAAAAtctaacagactttttaggg       >  2:534804/1‑140 (MQ=255)

                                                                                                                                      cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga      <  1:660598/140‑1 (MQ=255)

                                                                                                                                      cGTTCTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga      <  1:637700/140‑1 (MQ=255)

                                                                                                                                       gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATGATTATCAATAATACCTCATATAAAATAAAAttttagggaccttttgaggac     >  1:601327/1‑140 (MQ=255)

                                                                                                                                       gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac     >  1:678183/1‑140 (MQ=255)

                                                                                                                                         tttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt   >  2:311095/1‑140 (MQ=255)

                                                                                                                                         tttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttaggaactttttagggactt   >  2:803745/1‑140 (MQ=255)

                                                                                                                                          ttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt  >  1:621563/1‑140 (MQ=255)

AAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT  >  USA300TCH1516_ALE/2085157‑2085434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.