New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2085296 =	72 (1.100)	17 (0.290)	15/230	NT	21.5%	coding (173/201 nt)	hlb_1	Phospholipase C
	?	USA300TCH1516_ALE	= 2128343	60 (1.030)					coding (1/825 nt)	hlb_2	Phospholipase C

CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAG  >  USA300TCH1516_ALE/2128204‑2128481                                                                                                                                            |                                                                                                                                             cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTa                                                                                                                                              >  1:571120/1‑140 (MQ=255)   aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtg                                                                                                                                            <  2:693170‑M2/140‑3 (MQ=255)    cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgt                                                                                                                                           <  1:290400‑M2/140‑4 (MQ=255)     aTCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta                                                                                                                                          <  2:339844‑M2/140‑5 (MQ=255)       ccGTTTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        >  2:634660‑M2/1‑134 (MQ=255)       ccGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAACCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatc                                                                                                                                        <  1:337194‑M2/140‑7 (MQ=255)        tgtgtaTCATAATTTGTTAGAAGAAAAATTTAAAGAAGAGTAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatcc                                                                                                                                       >  2:191851‑M2/2‑133 (MQ=255)        cGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACATAGAAACAACTAAAACGATGTAATTTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATCAATACTGTTGTTACAAGGTTTCTAtgtatca                                                                                                                                       <  2:287566‑M2/140‑8 (MQ=255)          tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGCCTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaa                                                                                                                                     <  1:669012‑M2/140‑10 (MQ=255)          tgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATGAATACTGTTGGTACAAGGTTTGTGtgtatccga                                                                                                                                     <  1:515968‑M2/140‑10 (MQ=255)            tATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaac                                                                                                                                   >  1:661506‑M2/1‑129 (MQ=255)             aTTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaact                                                                                                                                  >  1:302683‑M2/1‑128 (MQ=255)              ttCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAACCGACTAAAATTTTAGCAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg                                                                                                                                 <  1:423464‑M2/140‑14 (MQ=255)                      tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAat                                                                                                                        <  1:108632/140‑1 (MQ=255)                      tGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAat                                                                                                                        <  1:59775/140‑1 (MQ=255)                       ggtAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAata                                                                                                                       <  2:103267/138‑1 (MQ=255)                          agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATa‑a                                                                                                                   <  1:444198/140‑1 (MQ=255)                            aagaaAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AAc                                                                                                                 <  1:641210/140‑1 (MQ=255)                                aaaaTTAAAAGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACgcgc                                                                                                             <  2:270519/140‑1 (MQ=255)                                aaaaTGTAATGTAGCGGAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACgcgc                                                                                                             <  2:273851/140‑1 (MQ=255)                                aaaaTGTAAAGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAACTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACgcgc                                                                                                             <  2:288566/140‑1 (MQ=255)                                 aaaTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGCTTTCTATGTTATCAGAAGT‑GTGGCAATATA‑AACGCGCt                                                                                                            >  1:752833/1‑140 (MQ=255)                                   aTTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagactgttaacataaaatta                                                                                                            <  1:461601‑M2/140‑35 (MQ=255)                                    tttAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacctttaacataaacttac                                                                                                           <  1:601936‑M2/140‑36 (MQ=255)                                    tttAAT‑AAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCACGATA‑AACGCGCTGAtt                                                                                                        >  1:253428/1‑140 (MQ=255)                                       aaTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattactta                                                                                                        <  1:599420‑M2/140‑39 (MQ=255)                                         tGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAAt                                                                                                    <  1:803339/140‑1 (MQ=255)                                           aaGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGAtttcaaag                                                                                                  <  2:751849/140‑6 (MQ=255)                                            agagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGCTTTAATCgg                                                                                                 >  1:168568/1‑140 (MQ=255)                                             gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattc                                                                                                  <  1:690935‑M2/140‑45 (MQ=255)                                             gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattc                                                                                                  >  1:340466‑M2/1‑96 (MQ=255)                                             gagGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGa                                                                                                <  1:434754/140‑1 (MQ=255)                                                 aCAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGAGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAAt                                                                                            >  1:362382/1‑140 (MQ=255)                                                      aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaa                                                                                         <  1:561176‑M2/140‑54 (MQ=255)                                                      aaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAAtcttct                                                                                       <  1:13672/140‑1 (MQ=255)                                                       aaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaa                                                                                        <  1:518704‑M2/140‑55 (MQ=255)                                                        aacaacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTAAATCGGACAATCTTCTta                                                                                     >  2:523175/1‑140 (MQ=255)                                                           aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTatat                                                                                  <  2:44156/140‑1 (MQ=255)                                                            acTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagc                                                                                   <  2:377041‑M2/140‑60 (MQ=255)                                                            acTAAAATTTGAGAAAGCATGTAATTCAGGGACCCATTGGGGACTCCAAACACAATAAATACTGTAGTTACAAGGTTTCTATG‑TATCCAAACTACGGCCGATATA‑AACGATCTGATTCAATAAGACAATCTGCTGatata                                                                                 >  2:745326/1‑139 (MQ=255)                                                              tAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcat                                                                                 >  1:225457‑M2/1‑79 (MQ=255)                                                                    tttAGAAAGTATGTAATTTAGGGACCCATTAGGAACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGTCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAaataa                                                                         <  1:239558/140‑1 (MQ=255)                                                                      caGAAAGTATGTAATTTAGGGACCCATTAGGGACCCCCACATGCTCAGATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatg                                                                       <  1:338842/139‑1 (MQ=255)                                                                       aGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTCTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatga                                                                      >  1:424740/1‑140 (MQ=255)                                                                        gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaagg                                                                       <  1:315469‑M2/140‑72 (MQ=255)                                                                        gAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacctatcattcaaaaagtaaaacagcataatatcaagg                                                                       <  2:237359‑M2/140‑72 (MQ=255)                                                                        gAAAGTAGGGAATTTAGGGAACCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAatgat                                                                     <  2:110705/140‑1 (MQ=255)                                                                           attATGTAATTTAGGGACCTATTAGGGATTCCAAACCCAATAAATACTGTTGTTACATGGTTTCTATG‑TATTCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTc                                                                  <  2:137053/138‑1 (MQ=255)                                                                             tATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                >  1:414571/1‑140 (MQ=255)                                                                             tATGTAATTTAGGGACCCATTAGCGACTCCAAACCCAATAAACACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt                                                                >  2:425375/1‑140 (MQ=255)                                                                              aTGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATAATGTTGTGACAAGGAATAGAAA‑GATACACGC‑AGGCACACTGGAGATCATTCTGATTTAATGGGAGAATCTTCTTATATTAAAAATAATTATGTCGTa                                                               >  2:571875/1‑140 (MQ=255)                                                                                 tAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataact                                                              <  1:329981‑M2/140‑81 (MQ=255)                                                                                 tAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataact                                                              <  1:215981‑M2/140‑81 (MQ=255)                                                                                 tAATTTAAGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAata                                                            <  1:689385/140‑1 (MQ=255)                                                                                 tAATTCAGGGGCTCATTAGGGACTCCAAACCCAATAAATACGGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑TACGAGCTGATTTAATCGGACAATCTGCTTATATTAAAAATAATGATGTCGTAata                                                            <  2:531835/140‑1 (MQ=255)                                                                                  aaTTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAatat                                                           <  1:518394/140‑1 (MQ=255)                                                                                   aTTTAAGGATCAATTAAGGACTACAAACCCAATAAATACTGTTGTTATAAGGTGTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataacttt                                                            >  2:436280‑M2/1‑58 (MQ=255)                                                                                    tttAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTc                                                         <  1:368031/140‑1 (MQ=255)                                                                                        gggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TCACGAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATg                                                     <  2:571120/140‑1 (MQ=255)                                                                                         ggACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGa                                                    <  1:693170/140‑1 (MQ=255)                                                                                          gACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGaa                                                   <  2:783282/140‑1 (MQ=255)                                                                                            ccaATTAGGGATTCCAAAACCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatc                                                   >  1:490031‑M2/1‑49 (MQ=255)                                                                                                ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCAttt                                             <  1:632605/140‑1 (MQ=255)                                                                                                ttAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATGCAATGCAGCAttt                                             >  1:271268/1‑140 (MQ=255)                                                                                                   gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAACAATAATGATGTCGTACTCTTCCATGAAGCATTTGAt                                          >  1:145963/1‑140 (MQ=255)                                                                                                     gACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATaa                                        >  1:420355/1‑140 (MQ=255)                                                                                                      ccTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAt                                       <  1:510606/139‑1 (MQ=255)                                                                                                        tCCAAACCCAATAAATACTGTTTTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                     <  1:35374/140‑1 (MQ=255)                                                                                                        tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                     >  2:711245/1‑140 (MQ=255)                                                                                                        tCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                     <  1:108652/140‑1 (MQ=255)                                                                                                        tCCAAACCCAATAAATACTGCTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATgg                                     <  1:35378/140‑1 (MQ=255)                                                                                                         ccAAACCCAATAAATACTTTTGTTACAATGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGt                                    <  2:148450/140‑1 (MQ=255)                                                                                                         ccAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAAAGGt                                    >  2:589592/1‑140 (MQ=255)                                                                                                           aaaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatat                                    <  2:424007‑M2/140‑107 (MQ=255)                                                                                                            aaCCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa                                 >  1:540254/1‑140 (MQ=255)                                                                                                             aCCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAGACTGGGGGCAATATA‑AACGAGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTACTATTCAATGAAGCATATGATAGTGGGGCAt                                >  1:383306/1‑140 (MQ=255)                                                                                                             aCCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAGTATA‑AGCGCGCTGATTTAATCGGACAATCTTCTTATATTAGAAATAATGATGTCGTAATATTGAATGAAGCATTTGATAATGGTGGAt                                >  1:657270/1‑140 (MQ=255)                                                                                                               ccAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCa                              >  1:128835/1‑140 (MQ=255)                                                                                                                 aataaataCTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGa                            >  2:662007/1‑140 (MQ=255)                                                                                                                   taaataCTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACa                          <  1:608598/140‑1 (MQ=255)                                                                                                                   taaataCTGTTGTTACAAGGTTTCTATG‑TATACAAACTGGGGGCAATATA‑AAAGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGCTCTCGTAATATTTAATGAAGCATTCGATACTGGTCCATAAGACa                          >  2:100232/1‑140 (MQ=255)                                                                                                                   taaagaCTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACa                          <  2:325517/140‑1 (MQ=255)                                                                                                                      ataCTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAat                       >  1:709693/1‑140 (MQ=255)                                                                                                                         cTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCAGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATAAGACAAattat                    >  2:92345/1‑140 (MQ=255)                                                                                                                                  cAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtg           <  1:51236/140‑1 (MQ=255)                                                                                                                                  cAAGGTTGCTAgggatccaaacgggagagtgtgaacataaaattacttagcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttt             >  2:601936‑M2/1‑11 (MQ=255)                                                                                                                                    aGGTTTCGATG‑CATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAAtgtg         <  2:214304/140‑1 (MQ=255)                                                                                                                                     ggTTTCTATG‑TATCCAAACTGGGGGCAATAAA‑TACGCGCTGATTTAATCGGACAATCTGCTGATATTAAAAATAATGAAGGCGTAATATACAATGAAGCATATGACAAAGGTGCATCAGACAAATTATTAGGTAATGTGa        >  2:701273/1‑140 (MQ=255)                                                                                                                                       tttCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaa      <  2:669012/140‑1 (MQ=255)                                                                                                                                       tttCTATG‑TATCCAAACCGGGGGCAATATA‑AACGCGCTGATTTAAGCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGGGCATCAGACAAATTATTAAGTAATGTGaaa      <  2:515968/140‑1 (MQ=255)                                                                                                                                        ttCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa     >  2:583354/1‑140 (MQ=255)                                                                                                                                        ttCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGAATATGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaa     >  2:693680/1‑140 (MQ=255)                                                                                                                                         tCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCTCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaa    <  2:218183/140‑1 (MQ=255)                                                                                                                                         tCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaa    <  2:68050/140‑1 (MQ=255)                                                                                                                                          cTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttttagggact     <  2:209439‑M2/140‑138 (MQ=255)                                                                                                                                           tATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAGTATTCAATGAAGCATTTGATAATGTTGCATCAGACATATTATTAGGTAAGTTGAAGAAAg  >  1:282216/1‑140 (MQ=255)                                                                                                                                           tATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTGCTTATATTAAAAATAATGATGTCGGAATATTCAATGTAGGATGTGATAATGGTGCATCAGACAAATTCTGAAGTAATGTGAAAAAAg  >  1:110663/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                             CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATG‑TATCCAAACTGGGGGCAATATA‑AACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAAG  >  USA300TCH1516_ALE/2128204‑2128481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.