| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2679952 = | 109 (0.970) | 4 (0.040) | 4/240 | 16.3 | 3.9% | intergenic (+4/+756) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | 2680007 = | 99 (0.990) | intergenic (+59/+701) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680104‑2679952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA > USA300TCH1516_ALE/2680007‑2680145 TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTG > 3:137575/1‑141 TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 4:156807/141‑1 TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 3:40906/141‑1 TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAG < 3:343426/141‑1 TATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGA < 2:900502/141‑1 ATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAA > 4:188594/1‑141 ATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAA > 1:314791/1‑141 ATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAA < 2:798120/141‑1 TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG < 1:183832/141‑1 TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG < 4:239537/141‑1 TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG < 2:643902/141‑1 TGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAG > 1:762885/1‑141 GCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGT > 3:161659/1‑141 TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT > 2:278519/1‑141 TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTT > 2:340605/1‑141 TCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATA > 3:63382/1‑141 CTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAA > 2:240282/1‑141 TCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCT > 1:307777/1‑141 TACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAA > 1:730453/1‑141 TGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAAT < 1:615545/141‑1 AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATT < 2:323375/141‑1 AGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATT > 1:5330/1‑141 GTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCT < 1:676183/141‑1 TTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTA > 1:123079/1‑141 TTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTAT > 1:724319/1‑141 TTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA > 2:48343/1‑141 TAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680104‑2679952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatagaagtttttATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAA > USA300TCH1516_ALE/2680007‑2680145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |