BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	298069 =	104 (0.920)	5 (0.050)	5/250	15.9	4.8%	intergenic (+208/‑220)	tarK/tarF_1	Teichoic acid ribitol‑phosphate polymerase TarK/Teichoic acid glycerol‑phosphate transferase
*	?	USA300TCH1516_ALE	298125 =	101 (0.970)	5 (0.050)	5/250	15.9	4.8%	intergenic (+264/‑164)	tarK/tarF_1	Teichoic acid ribitol‑phosphate polymerase TarK/Teichoic acid glycerol‑phosphate transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

AGTGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTATGATG  >  USA300TCH1516_ALE/297932‑298209

aGTGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATc                                                                                                                                           <  4:377564/141‑1 (MQ=255)

aGTGAGCAACATGTCATGAGGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATc                                                                                                                                           >  1:74981/1‑141 (MQ=255)

 gTGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCg                                                                                                                                          >  2:238382/1‑141 (MQ=255)

    aGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTa                                                                                                                                       >  1:152163/1‑141 (MQ=255)

     gCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATAGATCCAATCGTTAt                                                                                                                                      >  1:307813/1‑141 (MQ=255)

      cAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCACGATTTATGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATc                                                                                                                                     <  1:708458/141‑1 (MQ=255)

         cATGTCANGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCTACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTGTCTaa                                                                                                                                  <  2:689622/141‑1 (MQ=255)

             tCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCa                                                                                                                              <  2:631116/141‑1 (MQ=255)

             tCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCa                                                                                                                              <  2:152163/141‑1 (MQ=255)

               atgatgAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATa                                                                                                                            <  2:198898/141‑1 (MQ=255)

                 gatgaGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATaaa                                                                                                                          <  2:42621/141‑1 (MQ=255)

                 gatgaGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATaaa                                                                                                                          >  1:183993/1‑141 (MQ=255)

                  atgaGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAAt                                                                                                                         >  2:537619/1‑141 (MQ=255)

                   tgaGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAAtg                                                                                                                        >  1:206330/1‑141 (MQ=255)

                     agaAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAAtgtg                                                                                                                      >  2:76662/1‑141 (MQ=255)

                        aGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTaa                                                                                                                   >  1:436086/1‑141 (MQ=255)

                        aGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTaa                                                                                                                   >  1:134880/1‑141 (MQ=255)

                           aGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAaca                                                                                                                >  3:385487/1‑141 (MQ=255)

                            ggACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAacac                                                                                                               <  1:292468/141‑1 (MQ=255)

                             gACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAAcaca                                                                                                              >  4:363869/1‑141 (MQ=255)

                             gACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAAcaca                                                                                                              >  1:90495/1‑141 (MQ=255)

                             gACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAAcaca                                                                                                              <  4:385487/141‑1 (MQ=255)

                                 ataCAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACg                                                                                                          <  1:589883/141‑1 (MQ=255)

                                   aCAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGtt                                                                                                        >  4:103729/1‑141 (MQ=255)

                                   aCAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGtt                                                                                                        <  2:170555/141‑1 (MQ=255)

                                      aTGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCTAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                     >  1:244405/1‑141 (MQ=255)

                                      aTGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                     <  1:470596/141‑1 (MQ=255)

                                          gaATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATg                                                                                                 >  2:384399/1‑141 (MQ=255)

                                           aaTAACCTTTTGATTTTTTTTTTATTATGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATgg                                                                                                >  4:152927/1‑141 (MQ=255)

                                            aTAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGa                                                                                               >  2:231672/1‑141 (MQ=255)

                                              aaCCTTTTGTTTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATa                                                                                             >  2:372332/1‑141 (MQ=255)

                                                 cTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACg                                                                                          <  2:816916/141‑1 (MQ=255)

                                                   tttGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGAt                                                                                        <  2:460645/141‑1 (MQ=255)

                                                     tGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGAttt                                                                                      <  2:187235/141‑1 (MQ=255)

                                                      gATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGAtttt                                                                                     <  1:362989/141‑1 (MQ=255)

                                                         ttttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTGTTtg                                                                                  >  2:220212/1‑141 (MQ=255)

                                                          tttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                     >  3:306909/1‑121 (MQ=255)

                                                          tttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                     <  4:306909/121‑1 (MQ=255)

                                                          tttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgt                                                                                 >  1:599983/1‑141 (MQ=255)

                                                          tttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgt                                                                                 >  2:125085/1‑141 (MQ=255)

                                                          tttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgt                                                                                 >  1:600106/1‑141 (MQ=255)

                                                            tCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgtta                                                                               >  1:717227/1‑141 (MQ=255)

                                                              aTGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgttatg                                                                             <  1:647585/141‑1 (MQ=255)

                                                                      ggCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTg                                                                     <  4:180580/141‑1 (MQ=255)

                                                                       gCGATTCAATCAAAAGCAATCGCCTGGCAACTGAATTGTCATTTTGTAAAATAAAATACTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTgg                                                                    <  4:15785/141‑1 (MQ=255)

                                                                        cGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGt                                                                   <  2:812743/141‑1 (MQ=255)

                                                                        cGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGt                                                                   <  2:175986/141‑1 (MQ=255)

                                                                         gATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTa                                                                  >  2:47096/1‑141 (MQ=255)

                                                                          aTTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTAc                                                                 <  4:351497/141‑1 (MQ=255)

                                                                          aTTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTAc                                                                 <  3:340836/141‑1 (MQ=255)

                                                                           ttCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACa                                                                <  3:363869/141‑1 (MQ=255)

                                                                           ttCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACa                                                                >  2:109712/1‑141 (MQ=255)

                                                                            tcaatcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACAt                                                               >  2:112207/1‑141 (MQ=255)

                                                                               atcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTaa                                                            >  3:366083/1‑141 (MQ=255)

                                                                               atcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTaa                                                            <  2:835863/141‑1 (MQ=255)

                                                                                tcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAAt                                                           >  2:355860/1‑141 (MQ=255)

                                                                                    aaGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCCATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATg                                                       <  3:392846/141‑1 (MQ=255)

                                                                                     aGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGt                                                      <  2:648780/141‑1 (MQ=255)

                                                                                       cAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTAt                                                    >  2:257829/1‑141 (MQ=255)

                                                                                       cAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTAt                                                    <  1:22600/141‑1 (MQ=255)

                                                                                        aaTCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATaa                                                                                            >  3:345522/1‑100 (MQ=255)

                                                                                        aaTCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATaa                                                                                            <  4:345522/100‑1 (MQ=255)

                                                                                         aTCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTAttt                                                  >  2:786816/1‑141 (MQ=255)

                                                                                          tCACCTTCCAACTGTATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTc                                                 <  2:257020/141‑1 (MQ=255)

                                                                                          tCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTc                                                 <  4:382915/141‑1 (MQ=255)

                                                                                           cACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCg                                                >  1:583405/1‑141 (MQ=255)

                                                                                           cACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCg                                                >  2:588137/1‑141 (MQ=255)

                                                                                           cACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCg                                                <  2:656581/141‑1 (MQ=255)

                                                                                            aCCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGt                                               >  1:645556/1‑141 (MQ=255)

                                                                                            aCCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGAGCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGTTACATTAATCATGTATTTCGt                                               <  1:6812/141‑1 (MQ=255)

                                                                                            aCCTTCCAACTGAAATGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGGTATGAATGGATAACGATTTTTTGTTATGTTACCGTGGTACATTATTCATGTATTTCGt                                               >  4:224891/1‑141 (MQ=255)

                                                                                              cTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAGTGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTAt                                             <  1:100696/141‑1 (MQ=255)

                                                                                              cTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTAt                                             <  1:854933/141‑1 (MQ=255)

                                                                                               ttCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATg                                            <  2:349839/141‑1 (MQ=255)

                                                                                               ttCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATg                                            >  2:195062/1‑141 (MQ=255)

                                                                                                    aCTGAATTGTCATTTTGTAAAATAAAATACTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAAt                                       <  1:433981/141‑1 (MQ=255)

                                                                                                      tGAATTGTCATTGTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAGCACATACGTTATGGATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTATTCATGTATTTCGTATGATAATTa                                     <  2:381599/141‑1 (MQ=255)

                                                                                                       gAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTaa                                    <  1:257645/141‑1 (MQ=255)

                                                                                                       gAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTaa                                    <  3:88760/141‑1 (MQ=255)

                                                                                                       gAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTaa                                    >  2:238725/1‑141 (MQ=255)

                                                                                                        aaTTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAAc                                   >  2:45548/1‑141 (MQ=255)

                                                                                                          ttGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGa                                 <  2:696284/141‑1 (MQ=255)

                                                                                                           tGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGAc                                <  1:125085/141‑1 (MQ=255)

                                                                                                           tGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGAc                                <  2:214326/141‑1 (MQ=255)

                                                                                                            gTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGATATGAAAGGATAACGAATTTTTGTTAAGTTAAAGTGGTAAATTAATCATCTATTTAGTATGATAAATAAAGaaa                               >  1:274287/1‑139 (MQ=255)

                                                                                                               aTTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAgt                            <  1:189771/141‑1 (MQ=255)

                                                                                                                 tttGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAgtgt                          <  1:238382/141‑1 (MQ=255)

                                                                                                                   tGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTaa                        <  4:398761/141‑1 (MQ=255)

                                                                                                                       aaataaaataATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGt                    <  2:83082/141‑1 (MQ=255)

                                                                                                                       aaataaaataATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGt                    >  1:166477/1‑141 (MQ=255)

                                                                                                                        aataaaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGtt                   >  4:211230/1‑141 (MQ=255)

                                                                                                                         ataaaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAAAACATACGTTATGAATGGATCACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAAAGACAAGTGTAATGGTTa                  >  2:283130/1‑141 (MQ=255)

                                                                                                                          taaaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTaa                 <  3:152927/141‑1 (MQ=255)

                                                                                                                           aaaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTaaa                <  4:150219/141‑1 (MQ=255)

                                                                                                                            aaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAAt               <  2:436086/141‑1 (MQ=255)

                                                                                                                             aataatCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATGTCGTATGATAATTAACGACAAGTGTAATGGTTAAATg              <  1:664327/141‑1 (MQ=255)

                                                                                                                              ataatCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGt             >  1:19375/1‑141 (MQ=255)

                                                                                                                                  tctaTCCACTCCTTATCTAATTAATAAATGTGTAAACACATACGTTAAGAATGGATAACTATTTTTTGTTATGCTAAAGTGGTACATTAATCATGTATCTCGTATCATAATTAACGACAAGTGTAATGGTTAAATGTAttt         <  1:791064/138‑1 (MQ=255)

                                                                                                                                         aaTCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTatgatg  <  1:588137/141‑1 (MQ=255)

                                                                                                                                         aaTCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTatgatg  <  1:47096/141‑1 (MQ=255)

AGTGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTATGATG  >  USA300TCH1516_ALE/297932‑298209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.