New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 10571798 (0.170)122 (0.010) 29/124 NT 7.2% coding (138/192 nt) USA300HOU_RS15665 hypothetical protein
?NC_012417 = 1071 1749 (0.210)coding (124/192 nt) USA300HOU_RS15665 hypothetical protein

Only 100 of 14090 total aligned reads displayed.

GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA  >  NC_012417/967‑1147
                                                                                          |                                                                                          
gAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACA                                                                                            >  2:272427‑M1/1‑91 (MQ=255)
  aaaGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACaaa                                                                                          <  2:5576492/91‑1 (MQ=255)
    aGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATg                                                                                        <  2:5040905/91‑1 (MQ=255)
     gCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGc                                                                                       >  1:4501460/1‑91 (MQ=255)
      cAAAATTCTTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCt                                                                                      <  1:5545762/91‑1 (MQ=255)
         aaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                                                                   <  1:3054638/91‑1 (MQ=255)
         aaTTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgta                                                                                   <  1:4617440/91‑1 (MQ=255)
          attattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtat                                                                                  <  1:567144/91‑1 (MQ=255)
            tattattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCtgtatgt                                                                                >  1:2710360/1‑91 (MQ=255)
              ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATTTATAATTACTGTCTTATTTTTGTGATAAATGCTGTATTTAg                                                                              >  2:6652941/1‑91 (MQ=21)
              ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAg                                                                              <  1:1496886/91‑1 (MQ=255)
               tattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACActacatacagcattt                                                                             <  2:3914533‑M1/91‑16 (MQ=255)
               tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAATTTCTGTATGTAGt                                                                             <  2:4658809‑M2/91‑2 (MQ=255)
               tATTTAAGACATTAGTGTTGACTAATGTCTTTTTTTTTTATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGTTATATTCTGTATGTAGt                                                                             <  2:4920582‑M2/91‑2 (MQ=255)
                aTTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtg                                                                            >  1:4361207‑M2/1‑89 (MQ=255)
                aTTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATGTTTGTGACAAATGCTGTATGTAGtg                                                                            <  2:6487221‑M2/91‑3 (MQ=255)
                 tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                           >  1:615476‑M2/1‑88 (MQ=255)
                 tttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                           >  1:1840645‑M2/1‑88 (MQ=255)
                  ttAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATCAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtc                                                                          >  2:6793198‑M2/1‑87 (MQ=255)
                     AGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                       >  1:1375649‑M1/1‑91 (MQ=255)
                     AGACATTAGTGTAGACTAATGTCTTTTTTGTTGATTTATTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                       >  2:5711214‑M1/1‑91 (MQ=255)
                       ACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaa                                                                     >  2:1289906‑M1/1‑91 (MQ=255)
                         ATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaaaaa                                                                   >  2:2456809‑M1/1‑91 (MQ=255)
                          TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                  >  2:6108985‑M1/1‑91 (MQ=255)
                          TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                  >  1:3295077‑M1/1‑91 (MQ=255)
                           TAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATa                                                                 >  1:4747962‑M1/1‑91 (MQ=255)
                              TGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                              >  1:6751363‑M1/1‑91 (MQ=255)
                               caacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGAc                                                             >  2:4508499‑M2/16‑91 (MQ=255)
                                 tGACTAATGTCTTTTTTGTTGATTTTTTATATAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaa                                                           <  1:6509869/91‑1 (MQ=255)
                                  gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa                                                          >  1:2824769/1‑91 (MQ=255)
                                  gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa                                                          >  1:1599671/1‑91 (MQ=255)
                                    ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                        <  1:2354475‑M2/81‑1 (MQ=255)
                                    ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                        <  1:5929951‑M2/81‑1 (MQ=255)
                                      aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                      <  2:1426155‑M2/83‑1 (MQ=255)
                                      aatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCa                                                      <  2:4167610‑M2/83‑1 (MQ=255)
                                        tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGAc                                                             <  1:399494‑M2/76‑1 (MQ=255)
                                        tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                    <  2:3132957‑M2/85‑1 (MQ=255)
                                        tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                    <  1:1261728‑M2/85‑1 (MQ=255)
                                        tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                    <  1:1973557‑M2/85‑1 (MQ=255)
                                              ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                              >  2:1037509/1‑91 (MQ=255)
                                                     gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                       <  1:6887906‑M2/91‑8 (MQ=255)
                                                      aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaa                                      <  2:5164880‑M2/91‑9 (MQ=255)
                                                       ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                     >  2:3786501‑M2/1‑82 (MQ=255)
                                                       ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaa                                     <  1:3168843‑M2/91‑10 (MQ=255)
                                                        tttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaa                                    >  1:6382734‑M2/1‑81 (MQ=255)
                                                          tttATAAAAAAGTACTGTCGTAATTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgacaaaaaaat                                  >  2:1822147‑M2/1‑79 (MQ=255)
                                                            tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                >  2:3265568‑M2/1‑77 (MQ=255)
                                                             ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataag                               <  2:1560997‑M2/91‑16 (MQ=255)
                                                               aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                             <  2:2588966‑M2/91‑18 (MQ=255)
                                                                   aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                         <  2:2323118‑M2/91‑22 (MQ=255)
                                                                    aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                        >  1:5427970‑M2/1‑69 (MQ=255)
                                                                     gTACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtact                       >  1:2607918‑M1/1‑22 (MQ=255)
                                                                     gTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                       <  1:3545539/91‑1 (MQ=255)
                                                                      tACTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactt                      >  1:4965506‑M1/1‑21 (MQ=255)
                                                                      tACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAg                      <  2:116893/91‑1 (MQ=255)
                                                                       aCTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttt                     >  2:2882506‑M1/1‑20 (MQ=255)
                                                                        cTGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttt                    >  2:5961222‑M1/1‑19 (MQ=255)
                                                                         tGTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaa                   >  1:2112037‑M1/1‑18 (MQ=255)
                                                                         tGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttt                   <  2:543873‑M1/91‑74 (MQ=255)
                                                                         tGTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttt                   <  2:3013280‑M1/91‑74 (MQ=255)
                                                                         TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt                   >  2:1686883‑M1/1‑91 (MQ=255)
                                                                          gTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtagttttttataaaaaatcaacaaaaaagacattagtcaac                  >  1:5789291‑M1/1‑17 (MQ=255)
                                                                          gTCTTATTTTTGTGACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaac                  <  1:3417550‑M1/91‑75 (MQ=255)
                                                                          gTCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttt                  <  1:4863481‑M1/91‑75 (MQ=255)
                                                                          gTCTTATTTTTGTGACAcaatatattgcgtttgtcctatttttgggacactacatatagcatttgtcacaaaaataagacagtacttttgt                  <  2:5848290‑M1/91‑75 (MQ=255)
                                                                          GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                  >  2:1944599‑M1/1‑91 (MQ=255)
                                                                          GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                  >  2:895607‑M1/1‑91 (MQ=255)
                                                                           tCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttta                 >  2:76985‑M1/1‑16 (MQ=255)
                                                                           tCTTATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtactttttta                 <  2:5302893‑M1/91‑76 (MQ=255)
                                                                            CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                >  1:2490319‑M1/1‑91 (MQ=255)
                                                                             ttATTTTTGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttata               >  2:432416‑M1/1‑14 (MQ=255)
                                                                             TTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa               >  1:83861‑M1/1‑91 (MQ=255)
                                                                             TTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa               >  1:223637‑M1/1‑91 (MQ=255)
                                                                                TTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGa            >  2:3409725‑M1/1‑91 (MQ=255)
                                                                                 ttttGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaa           >  2:6248168‑M1/1‑10 (MQ=255)
                                                                                  tttGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaa          >  1:5092234‑M1/1‑9 (MQ=255)
                                                                                  tttGTGACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaa          >  2:6370247‑M1/1‑9 (MQ=255)
                                                                                  TTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTTTGTCACAAAAATAAGACAGTACAGCTTTGTATGata          <  1:1715751‑M1/91‑1 (MQ=255)
                                                                                    tgtgACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatc        <  1:5202219‑M1/91‑85 (MQ=255)
                                                                                    ggtgACAAATGCTGTATGTAGTGTAACAAAAATAAGACAATCGCAATAAAAAAAAAAAAAAAAATAAGACAGTACAGCTTTGTATGATATc        <  2:4776598/90‑1 (MQ=19)
                                                                                      tgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctta      >  1:729818‑M1/1‑5 (MQ=255)
                                                                                      tgACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtctta      >  1:100022‑M1/1‑5 (MQ=255)
                                                                                      tgACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaa      >  2:3542499‑M1/1‑5 (MQ=255)
                                                                                      tgACAcaatatattgcgtttgtcttatttttgtgacactacatacagaatttgtaacaaaaataagacagtacttttttataaaaaatcaa      <  2:2183996‑M1/91‑87 (MQ=255)
                                                                                      TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc      >  1:426231‑M1/1‑91 (MQ=255)
                                                                                      TGACAAATGCTCTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc      <  2:6947430‑M1/91‑1 (MQ=255)
                                                                                       gACActacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagaaattagtcaacactaatgtcttaa     >  2:2086382‑M1/1‑4 (MQ=255)
                                                                                       gACAcaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaac     <  1:3874351‑M1/91‑88 (MQ=255)
                                                                                       GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt     >  2:3641627‑M1/1‑91 (MQ=255)
                                                                                        ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt    <  1:1136371‑M1/91‑1 (MQ=255)
                                                                                        ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt    >  1:6260419‑M1/1‑91 (MQ=255)
                                                                                        ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt    >  1:92254‑M1/1‑91 (MQ=255)
                                                                                         cacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaa   >  1:5309124‑M1/1‑2 (MQ=255)
                                                                                         cacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaa   >  1:4119088‑M1/1‑2 (MQ=255)
                                                                                         cacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaa   >  1:6626197‑M1/1‑2 (MQ=255)
                                                                                         cacaatatattgcgtttgtcttatttttgtgacactacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaa   <  1:3654401‑M1/91‑90 (MQ=255)
                                                                                         CAAATGCTGTATGTAGTGTCACAAAAATGAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACttt   >  1:2929336‑M1/1‑91 (MQ=255)
                                                                                          actacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaata  <  1:6045635‑M1/91‑91 (MQ=255)
                                                                                          actacatacagcatttgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaata  >  2:4040341‑M1/1‑1 (MQ=255)
                                                                                          aaaTGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaata  <  1:376515‑M2/91‑77 (MQ=255)
                                                                                          |                                                                                          
GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTA  >  NC_012417/967‑1147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.