BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1057	1798 (0.170)	122 (0.010)	29/124	NT	7.2%	coding (138/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	= 1071	1749 (0.210)	122 (0.010)	29/124	NT	7.2%	coding (124/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 10236 total aligned reads displayed.

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

ttattTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATTTATAATTACTGTCTTATTTTTGTGATAAATGCTGTATTTAg                                                                                            >  2:6652941/1‑91 (MQ=21)

   tataaGACATTAGTGTAGACTAATGTCTTTTTTGTTAAAAAAAAATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgt                                                                                         >  2:1528328‑M2/3‑88 (MQ=255)

    agtgatatcatacaaagctgtactgtcttatttttgtgacacaatatattgcgttTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTc                                                                                        >  2:5197282‑M1/56‑91 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  1:100022‑M2/1‑86 (MQ=255)

     tAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtca                                                                                       >  1:1614437‑M2/1‑86 (MQ=255)

       AGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                                     >  1:3545195‑M1/1‑91 (MQ=255)

       AGACATTAGTGAAGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTcaca                                                                                     >  2:2796459‑M1/1‑91 (MQ=255)

        GACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACaa                                                                                    <  2:4689319‑M1/91‑1 (MQ=255)

           ATTAGTGTTGACTAATGTCTTTTTTCTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTGGTGTCACaaaaa                                                                                 >  2:6503712‑M1/1‑91 (MQ=255)

            TTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAAt                                                                                >  1:4641679‑M1/1‑91 (MQ=255)

              AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATaa                                                                              <  2:2036044‑M1/91‑1 (MQ=255)

              AGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTCTTGTTACTAATGCTGTATGTAGTGTCACAAGAATaa                                                                              <  2:6936338‑M1/91‑1 (MQ=255)

               GTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAg                                                                             <  1:5473031‑M1/91‑1 (MQ=255)

                TGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                                            >  1:6577294‑M1/1‑91 (MQ=255)

                TGTTGACTAATGTCTTTTTTGTTGAAATATAATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGa                                                                            >  2:1371820‑M1/1‑91 (MQ=255)

                 gtTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGtgtcacaaaaataagac                                                                           >  1:6207881‑M2/1‑74 (MQ=255)

                  aacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACa                                                                          >  2:5065997‑M2/15‑91 (MQ=255)

                  aacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACa                                                                          >  1:4129833‑M2/15‑91 (MQ=255)

                  aacactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACa                                                                          >  1:3312016‑M2/15‑91 (MQ=255)

                    gACTAATGTCTTTTTTTTTTTTTTTTTATAAAAAAGTACTGTCTTATTTTTGTTACTAATGCTGTATGTAGTGTCTCAACAATAAGACaaa                                                                        >  2:613315/1‑91 (MQ=18)

                    gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa                                                                        >  2:2269863/1‑91 (MQ=255)

                       taatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGc                                                                     <  1:1266611‑M2/82‑1 (MQ=255)

                         atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                   >  2:320773‑M2/8‑91 (MQ=255)

                         atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                   >  1:3870570‑M2/8‑91 (MQ=255)

                          tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                                  <  1:1986206‑M2/85‑1 (MQ=255)

                           gtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAata                                                                 >  1:992252‑M2/6‑91 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                <  1:790450‑M2/87‑1 (MQ=255)

                            tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                <  1:5339551‑M2/87‑1 (MQ=255)

                               ttgttgttgATTGTTTATAAAAAAGTACTGTATTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt                                                             <  2:88486/88‑1 (MQ=255)

                               tTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACATATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATAtt                                                             <  2:6790952‑M2/90‑1 (MQ=255)

                                  ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                          >  1:1857553‑M2/1‑89 (MQ=255)

                                  ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                          >  1:2127569‑M2/1‑89 (MQ=255)

                                   tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                         >  1:1133147‑M2/1‑88 (MQ=255)

                                   tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                         >  2:5617344‑M2/1‑88 (MQ=255)

                                   tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                         >  2:4565943‑M2/1‑88 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        >  1:4896877‑M2/1‑87 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        >  2:5995376‑M2/1‑87 (MQ=255)

                                    gttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtc                                                        >  1:6455594‑M2/1‑87 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCAGAAAAATAAGACAAACGCAATATATTGtgtca                                                       >  1:6843850‑M2/1‑86 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       >  2:2530403‑M2/1‑86 (MQ=255)

                                     ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                       >  1:6335255‑M2/1‑86 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     >  1:5731360‑M2/1‑84 (MQ=255)

                                       gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     <  1:2734045‑M2/91‑8 (MQ=255)

                                        aTTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaa                                                    <  2:2394683‑M2/91‑9 (MQ=255)

                                         ttttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                     <  2:6254245‑M2/89‑8 (MQ=255)

                                           ttttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaa                                                 <  1:3749582‑M2/91‑12 (MQ=255)

                                            tttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaat                                                >  1:5974847‑M2/1‑79 (MQ=255)

                                            tttATAAAAAAGTACTGTATTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaat                                                >  2:264389‑M2/1‑79 (MQ=255)

                                             ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata                                               >  1:4267852‑M2/1‑78 (MQ=255)

                                             ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata                                               >  2:5746114‑M2/1‑78 (MQ=255)

                                              tataAAAAAGTACTGTCTTATTTTTGTGACACATGCTGTATGTAGTGTCCCAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                              <  2:758273‑M2/91‑15 (MQ=255)

                                              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                              <  1:1375993‑M2/91‑15 (MQ=255)

                                              tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                              <  2:4112327‑M2/91‑15 (MQ=255)

                                               ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataag                                             <  2:3713550‑M2/91‑16 (MQ=255)

                                                taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga                                            <  1:3641627‑M2/91‑17 (MQ=255)

                                                 aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                           >  2:5345289‑M2/1‑74 (MQ=255)

                                                 aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                           <  1:453600‑M2/91‑18 (MQ=255)

                                                  aaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagaca                                          <  1:3995982‑M2/91‑19 (MQ=255)

                                                   aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                         >  2:4412272‑M2/1‑72 (MQ=255)

                                                     aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                       >  2:5469903‑M2/1‑70 (MQ=255)

                                                     aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                       >  1:5601666‑M2/1‑70 (MQ=255)

                                                      aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                      >  1:22617‑M2/1‑69 (MQ=255)

                                                         aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   >  2:1649089/1‑91 (MQ=255)

                                                         aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   <  1:6979807/91‑1 (MQ=255)

                                                         aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                   <  1:2630058/91‑1 (MQ=255)

                                                         aCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCAC‑AAAATAAGACAGTACAGCt                                  >  1:1733163/1‑91 (MQ=255)

                                                           TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt                                 >  2:294492‑M1/1‑91 (MQ=255)

                                                            GTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCttt                                <  2:4245790‑M1/91‑1 (MQ=255)

                                                             TCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTg                               >  2:5880004‑M1/1‑91 (MQ=255)

                                                              CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                              >  1:2963425‑M1/1‑91 (MQ=255)

                                                              CTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGt                              >  2:111321‑M1/1‑91 (MQ=255)

                                                               TTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTa                             >  1:5013739‑M1/1‑91 (MQ=255)

                                                                 ATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATg                           <  1:892883‑M1/91‑1 (MQ=255)

                                                                   TTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGat                         >  1:1501185‑M1/1‑91 (MQ=255)

                                                                    TTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                        <  1:6107938‑M1/91‑1 (MQ=255)

                                                                     TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                       >  1:286017‑M1/1‑91 (MQ=255)

                                                                     TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                       >  1:5231919‑M1/1‑91 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  2:3593847‑M1/91‑1 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  2:4830059‑M1/91‑1 (MQ=255)

                                                                      TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                      <  2:1911779‑M1/91‑1 (MQ=255)

                                                                       GTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa                     <  1:6703810‑M1/91‑1 (MQ=255)

                                                                       GTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa                     >  1:5111654‑M1/1‑91 (MQ=255)

                                                                        TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                    <  2:6384061‑M1/91‑1 (MQ=255)

                                                                        TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                    >  1:3072329‑M1/1‑91 (MQ=255)

                                                                        TGACAAATGCAGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                    <  1:2380967‑M1/91‑1 (MQ=255)

                                                                         GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                   <  2:4937585‑M1/91‑1 (MQ=255)

                                                                          aCAAATGCTGTATGTAGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaa                  <  1:3175486‑M2/91‑75 (MQ=255)

                                                                           CAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACttt                 >  2:3857014‑M1/1‑91 (MQ=255)

                                                                           CAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACttt                 >  2:3974799‑M1/1‑91 (MQ=255)

                                                                            AAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                <  2:1246427‑M1/91‑1 (MQ=255)

                                                                                  tgtatgtaGtgtcacaaaaataagacagtacttttttataaaaaatcaacaaaaaagacattagtcaacactaatgtcttaaataataatt          <  2:3075336‑M2/91‑83 (MQ=255)

                                                                                  tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc          >  2:2156050/1‑91 (MQ=255)

                                                                                  tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc          >  1:4770033/1‑91 (MQ=255)

                                                                                   gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc         >  1:250683/1‑91 (MQ=255)

                                                                                    tatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc         >  1:3425384/1‑90 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       <  2:3337577/91‑1 (MQ=255)

                                                                                     atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCtt       >  2:3489343/1‑91 (MQ=255)

                                                                                       gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTaa     >  2:1790747/1‑91 (MQ=255)

                                                                                       gtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTaa     >  1:4393206/1‑91 (MQ=255)

                                                                                          gtgtCATAAAAATAAGACGAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTGTGTATGATATCACTTTAAAATACCTTaaatc  <  1:5860138/91‑3 (MQ=37)

TTATTTAAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC  >  NC_012417/981‑1161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.