BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42564 =	378 (1.060)	21 (0.080) +TACATTATAAAATACATATC	7/120	NT	6.9%	coding (1402/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	1803072 =	NA (NA)	21 (0.080) +TACATTATAAAATACATATC	7/120	NT	6.9%	coding (796/807 nt)	USA300HOU_RS12765	hypothetical protein

Only 100 of 443 total aligned reads displayed.

GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGACAT  >  USA300TCH1516_ALE/42474‑42654

 ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCa                                                                                           <  1:6600911/91‑1 (MQ=255)

  gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                                                                                          <  1:3491165/91‑1 (MQ=255)

  gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAACAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                                                                                          <  1:6159095/91‑1 (MQ=255)

    cATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCt                                                                                        >  2:3221391/1‑91 (MQ=255)

     aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc                                                                                       <  2:1656325/91‑1 (MQ=255)

     aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc                                                                                       >  1:6301828/1‑91 (MQ=255)

        aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGtt                                                                                    <  1:3782451/91‑1 (MQ=255)

             cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct                                                                               <  2:5904157/91‑1 (MQ=255)

              ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                                              <  2:4587780/91‑1 (MQ=255)

              ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta                                                                              >  2:5825405/1‑91 (MQ=255)

               tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                             <  1:1460527/91‑1 (MQ=255)

               tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                             <  1:2703158/91‑1 (MQ=255)

               tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                                             <  1:33302/91‑1 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                            <  1:4578364/91‑1 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                            >  2:6042069/1‑91 (MQ=255)

                ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                                            <  1:4314558/91‑1 (MQ=255)

                 gATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta                                                                           >  1:5918604/1‑91 (MQ=255)

                 gATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta                                                                           >  2:1849988/1‑91 (MQ=255)

                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                         >  2:1160594/1‑91 (MQ=255)

                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                         <  1:1274266/91‑1 (MQ=255)

                   tAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTactact                                                                         >  2:1430027/1‑91 (MQ=255)

                      gTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtttt                                                                      <  1:1879788/91‑1 (MQ=255)

                       tGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                                     <  2:3001651/91‑1 (MQ=255)

                        gAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                                    <  2:3550841/91‑1 (MQ=255)

                         aaaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                                                   <  2:2879338/91‑1 (MQ=255)

                         aaaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                                                   >  1:1153641/1‑91 (MQ=255)

                          aaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCttt                                                                  >  2:6654391/1‑90 (MQ=255)

                          aaaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTta                                                                  >  1:5733677/1‑91 (MQ=255)

                           aaagctgatttccatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGCGCTGCTATTTTCCTtat                                                                 <  2:4149730‑M1/28‑1 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                 >  1:3701745/1‑91 (MQ=255)

                           aaaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtat                                                                 <  2:75010/91‑1 (MQ=255)

                            aaaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAACTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTtatt                                                                >  2:1541398/1‑90 (MQ=255)

                             aaGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTatat                                                               <  1:6007208/91‑1 (MQ=255)

                              aGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                                              <  1:3583909/91‑1 (MQ=255)

                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                                             >  1:1027918/1‑91 (MQ=255)

                               gACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                                             >  1:1740209/1‑91 (MQ=255)

                                tgatttccatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTaa                                                            <  1:5416872‑M1/33‑1 (MQ=255)

                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                            >  1:6856123/1‑91 (MQ=255)

                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                            >  2:3891989/1‑91 (MQ=255)

                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                            >  1:974802/1‑91 (MQ=255)

                                aCAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                                            >  1:4158631/1‑91 (MQ=255)

                                  aaTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                                          <  2:5742054/91‑1 (MQ=255)

                                   aTTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTg                                                         <  2:1273297/91‑1 (MQ=255)

                                    tttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                                        <  2:3439419/91‑1 (MQ=255)

                                    ttccatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGc                                                        <  1:4635499‑M1/37‑1 (MQ=255)

                                     ttCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGcc                                                       <  1:4954885/91‑1 (MQ=255)

                                     tctatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGcc                                                       <  1:3969853‑M1/38‑1 (MQ=255)

                                     tccatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGcc                                                       <  1:164538‑M1/38‑1 (MQ=255)

                                       tatcaaataattaatagaaatcagcttttttgatatgtattttataatgtaCAGCTCGTTGAGCTGCTATTTTCCTTATATTAAGTGCCAt                                                     <  1:2681604‑M1/40‑1 (MQ=255)

                                           tGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAAt                                                 >  1:4771539/1‑91 (MQ=255)

                                            gAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATa                                                <  2:6354073/91‑1 (MQ=255)

                                             aaaTAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATAc                                               <  2:4740783/91‑1 (MQ=255)

                                                 aataTAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaaaa                                           <  2:5282431/91‑1 (MQ=255)

                                                  atatAGAAATTGTCTTTTTTATAAATTTTTTGTTTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTGAGTGCCATTAATACAAAAc                                          >  2:364466/1‑91 (MQ=255)

                                                   tataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAAcc                                         >  2:2276185/1‑91 (MQ=255)

                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                        >  2:1017494/1‑91 (MQ=255)

                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                        >  1:712748/1‑91 (MQ=255)

                                                    ataGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                                        <  1:5976378/91‑1 (MQ=255)

                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                       <  2:4057087/91‑1 (MQ=255)

                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                       <  1:5215914/91‑1 (MQ=255)

                                                     taGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                       >  2:2557247/1‑91 (MQ=255)

                                                     taGAAATTGTCTTTTTTATAAATTTGTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                                       <  2:3368973/91‑1 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                      >  1:6243847/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                      >  1:2194221/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                      >  1:815765/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                      >  1:3108097/1‑91 (MQ=255)

                                                      aGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                                      <  1:5058075/91‑1 (MQ=255)

                                                       gAAATTGTCTTTTTTATTTTTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGt                                     >  2:3112989/1‑91 (MQ=255)

                                                           ttGTCTTTTTTTTATATTTTTTGATTATTTTAAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGTCATTAATACAAAACCAAGTtctt                                 >  2:5187164/1‑90 (MQ=25)

                                                            tGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTctct                                <  2:660587/91‑1 (MQ=255)

                                                            tGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTctct                                >  1:6441235/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                               >  2:1920961/1‑91 (MQ=255)

                                                             gTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt                               >  2:3812240/1‑91 (MQ=255)

                                                              tCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt                              <  2:5620425/91‑1 (MQ=255)

                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                             <  1:4834840/91‑1 (MQ=255)

                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                             <  1:406404/91‑1 (MQ=255)

                                                               cTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt                             <  1:6718364/91‑1 (MQ=255)

                                                                ttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTg                            >  1:5117369/1‑91 (MQ=255)

                                                                 tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa                           <  1:636606/91‑1 (MQ=255)

                                                                  ttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGAc                          >  2:4889488/1‑91 (MQ=255)

                                                                    ttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACtt                        <  2:2667427/91‑1 (MQ=255)

                                                                       taAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAt                     <  1:1075126/91‑1 (MQ=255)

                                                                       taAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAt                     >  2:5445551/1‑91 (MQ=255)

                                                                       taAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAt                     >  2:5502098/1‑91 (MQ=255)

                                                                        aaaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTAtt                    <  1:4882417/91‑1 (MQ=255)

                                                                         aaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTg                   >  2:5056268/1‑91 (MQ=255)

                                                                         aaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTg                   >  1:4433392/1‑91 (MQ=255)

                                                                         aaTTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTg                   <  1:2857439/91‑1 (MQ=255)

                                                                           ttttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTATATTGAg                 >  1:5533790/1‑91 (MQ=255)

                                                                            tttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGt                <  1:2564429/91‑1 (MQ=255)

                                                                             ttttGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTc               <  2:1787633/91‑1 (MQ=255)

                                                                                tGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTc            >  2:693644/1‑91 (MQ=255)

                                                                                tGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTc            >  1:1837449/1‑91 (MQ=255)

                                                                                  attattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCgg          <  2:5925921/91‑1 (MQ=255)

                                                                                   ttattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGga         <  2:4239975/91‑1 (MQ=255)

                                                                                   ttattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGga         >  2:2440389/1‑91 (MQ=255)

                                                                                   ttattTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGga         >  1:792391/1‑91 (MQ=255)

                                                                                     attTTCAGCACGTTGAGCTACTACTTTTCTTATATTAACTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgaca       >  2:61842/1‑91 (MQ=255)

                                                                                       tttCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacaga     <  1:2511446/91‑1 (MQ=255)

                                                                                       tttCAGCTCGATGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGgacaga     <  2:5547631/91‑1 (MQ=255)

GGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTATTGAGTCCTCGGACAGACAT  >  USA300TCH1516_ALE/42474‑42654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.