| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 891741 | NA (NA) | 34 (0.110) +CGCCGGCAAG |
6/140 | NT | 16.9% | intergenic (+159/‑580) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1072278 | 192 (0.540) | intergenic (‑750/+55) | USA300HOU_RS05290/folD | Pesticidal crystal protein Cry22Aa/Bifunctional protein FolD protein | |||||
Only 100 of 245 total aligned reads displayed.
AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAGCG > USA300TCH1516_ALE/891666‑891831 | aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCAt < 1:757842/91‑1 (MQ=31) tatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCt < 1:1839705/91‑1 (MQ=37) tatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCt < 1:2143508/91‑1 (MQ=37) ttttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTg < 2:4345540/90‑1 (MQ=38) atttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTg < 2:4343519/91‑1 (MQ=38) tttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGt < 2:3010498/91‑1 (MQ=39) ttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTa > 1:4920503/1‑91 (MQ=40) tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAg > 1:4988066/1‑91 (MQ=255) tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAg > 2:2954898/1‑91 (MQ=255) cgtcgtCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGa > 1:5181333/1‑91 (MQ=255) gtcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTTGGGCCCATCCCCAACTTGCATTGCCTGTAGaa > 2:1539655/1‑91 (MQ=255) tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAAt < 1:1603584/91‑1 (MQ=255) tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCACAACTTGCATTGCCTGTAGact > 2:6886484/1‑89 (MQ=255) tcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTc > 2:1029541/1‑91 (MQ=255) cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCt > 1:3809564/1‑91 (MQ=40) ccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCtc > 2:176250/1‑90 (MQ=255) aCCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCtttt < 2:3689801/91‑1 (MQ=255) cccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg > 1:675705/1‑91 (MQ=255) cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGaa > 2:5590703/1‑91 (MQ=255) cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGaa < 1:6116199/91‑1 (MQ=255) cAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTCTTCGaa > 2:6402364/1‑91 (MQ=255) aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGaaa > 2:2324387/1‑91 (MQ=255) aaCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGaaa > 2:6282694/1‑91 (MQ=255) aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAAt < 1:477437/91‑1 (MQ=255) aCTTGCATCGTCTGCAGAACATGGGAAACCAATTTCTCTTTGTCGGCGCCCATCCCCAACTTACATTCCCTGTAGAATTTCTATTCGaaag > 2:3176431/1‑90 (MQ=17) ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtc < 1:6372275/91‑1 (MQ=255) ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtc > 2:5353710/1‑91 (MQ=255) ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtc < 1:5450602/91‑1 (MQ=255) tGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtct > 1:6318115/1‑91 (MQ=255) gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAACTtctc > 2:3563150/1‑91 (MQ=255) gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAACTtctc > 2:1058957/1‑91 (MQ=255) gCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtctc < 2:2071529/91‑1 (MQ=40) aTTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCtg > 1:2996939/1‑91 (MQ=255) tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCtgtg < 1:4491248/91‑1 (MQ=255) tGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCtgtg < 1:1976877/91‑1 (MQ=255) gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTgtgt < 2:1335233/91‑1 (MQ=255) gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTgtgt < 2:4493996/91‑1 (MQ=255) gTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTgtgt < 2:5022970/91‑1 (MQ=255) tCTGTAGAAATTGGGAATCGAATTTCTCTTAGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGtt < 1:5379500/91‑1 (MQ=255) tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGtt < 2:512144/91‑1 (MQ=255) tCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGtt < 1:6628223/91‑1 (MQ=255) tGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTgg < 1:2096108/91‑1 (MQ=255) gtggAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTggg < 2:6184460/88‑1 (MQ=255) gTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTggg < 2:3235335/91‑1 (MQ=255) aGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGc < 2:6881444/91‑1 (MQ=255) aGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGc < 1:3652849/91‑1 (MQ=255) aaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGcccc < 2:266416/91‑1 (MQ=255) aaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGcccc < 1:6984962/91‑1 (MQ=255) ttGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTg < 1:3401411/91‑1 (MQ=255) ttGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTg < 1:3322282/91‑1 (MQ=255) ttGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTg < 1:2482660/91‑1 (MQ=255) ttGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTg < 1:6081482/91‑1 (MQ=255) tGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTCCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGa > 1:6853695/1‑91 (MQ=255) gggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAc < 2:6048186/91‑1 (MQ=255) gggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCCCTGTGTTGGGGCCCCTGAc > 2:47322/1‑91 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACt > 1:1022570/1‑91 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACt > 2:855248/1‑91 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACt > 2:4056750/1‑91 (MQ=40) ggAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACt > 2:3347207/1‑91 (MQ=255) gAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTa > 1:1466195/1‑91 (MQ=255) attcccAATTTCTCTTTGTTGGGGCCCATCCCCAGCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTa > 2:4136323/5‑91 (MQ=255) aTCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTg > 1:1687249/1‑85 (MQ=255) aTCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGa < 2:2400387/91‑1 (MQ=255) aTCCAATTTCTCTTTGTTGGGGCCCATCACCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGa > 2:6688214/1‑91 (MQ=255) tcaaaTTTCTATTAAATGGGGCCCATGCCCAACTTGCATTGCCTGTAGAATTTCTTATCGAAATTCTTTGTGTTGTGTCCCCTGAATaaaa < 2:416429/88‑1 (MQ=9) ccAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAAt > 1:420967/1‑91 (MQ=255) ccAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAAt < 1:5394870/91‑1 (MQ=255) cAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAAtt > 1:3061493/1‑91 (MQ=255) aaTTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTg < 1:4692357/91‑1 (MQ=255) aaTTACTCATTGTTGGGGCCCAACCCAAACTTGCACTTGCTGTAAAATTTCTTTTCGAAATTCTCTGTATTGGGACCCTTGACTAGAAttt < 2:3672118/91‑2 (MQ=2) aTTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGa > 1:148129/1‑91 (MQ=255) aTTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGa < 1:2876385/91‑1 (MQ=255) aTTTCTCTTTGTTGGGGCCCATCACCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGa < 2:759123/91‑1 (MQ=255) tttCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaa > 2:1210969/1‑91 (MQ=255) tttCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaa > 1:3368840/1‑91 (MQ=255) tttCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaa > 1:5569097/1‑91 (MQ=255) ttCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaa < 2:6683695/91‑1 (MQ=255) ttCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaa < 2:131986/91‑1 (MQ=255) tctcTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaaa > 1:4258900/1‑91 (MQ=255) tctcTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGCAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaaa < 1:5784793/91‑1 (MQ=255) ctctTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaaa‑a < 1:2693510/91‑1 (MQ=255) ctctTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaaa‑a < 1:3748510/91‑1 (MQ=255) ctctTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGaaaa‑a < 1:1140115/91‑1 (MQ=255) tttGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAATAGAATTGAAAA‑AAGc < 2:1177210/91‑1 (MQ=255) tttGTTGGGGCCCATCCCCAACTTGCATTGCATGTAGAATATCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAATAAAAAAGAAAA‑AAGc < 2:639170/91‑1 (MQ=14) ttgttgGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCt > 1:1102810/1‑91 (MQ=255) tgttgGGGCCCATGACCAACTTGCGTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAAAAGAATTGAAAA‑AAGCtt < 2:3634827/91‑1 (MQ=14) ggggCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTa > 2:211842/1‑91 (MQ=255) ggggCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTa > 2:1084843/1‑91 (MQ=255) gggCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTAc > 1:6529988/1‑91 (MQ=255) gggCCCATCCCCAACTTGCATTGCCTGTACAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGATTTGAAAA‑AAGCATGtacc > 1:5853876/1‑88 (MQ=14) ggccccATCCCCAACTTGCATTCCCTGTAGCATTTCTTTCCCAAATTCTCCTTGCTGGGGCCCCTGACTAGAATTTAAAA‑AAGCTTGTGAc > 2:4635633/4‑91 (MQ=14) ggCCCATCCCCAACTTGCATTGCCTGTAGAACTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACa > 1:6823951/1‑91 (MQ=255) gCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACaa > 2:2548824/1‑91 (MQ=40) cccATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAg < 1:5274693/91‑1 (MQ=40) cccATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAg < 1:4010546/91‑1 (MQ=39) ccATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAgc < 2:3946665/91‑1 (MQ=38) cATCCCCGACTTGCATTGCCTGTAGAATTTCGTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAgc < 1:176250/91‑1 (MQ=11) cATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAgcg > 1:4153298/1‑91 (MQ=38) cATCCCCAACTTGCATTGCCTGTAGAATTTCTTCTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTAGTTACAAgcg > 1:6971261/1‑91 (MQ=255) | AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑AAGCTTGTTACAAGCG > USA300TCH1516_ALE/891666‑891831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |