| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 891741 | NA (NA) | 34 (0.110) +CGCCGGCAAG |
6/140 | NT | 16.9% | intergenic (+159/‑580) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1072278 | 192 (0.540) | intergenic (‑750/+55) | USA300HOU_RS05290/folD | Pesticidal crystal protein Cry22Aa/Bifunctional protein FolD protein | |||||
Only 100 of 283 total aligned reads displayed.
ATTTTCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTGCAAG > USA300TCH1516_ALE/1072188‑1072368 | ttttCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAact < 2:5054018/91‑1 (MQ=255) tttCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAacta > 1:4144647/1‑91 (MQ=255) ttCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAactac < 1:3185059/91‑1 (MQ=255) ttCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAactac < 2:4062280/91‑1 (MQ=255) cGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTg < 1:6315752/91‑1 (MQ=40) cGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTg < 2:1663271/91‑1 (MQ=255) gTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGc < 1:366788/91‑1 (MQ=255) aaaaTTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCa < 2:363430/91‑1 (MQ=39) aaaaTTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCa > 1:2529369/1‑91 (MQ=39) aaaTTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCAt < 2:595429/91‑1 (MQ=40) aaTTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCAtt < 2:3304969/91‑1 (MQ=255) atttatttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATta < 2:5616524/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCGGCAAGGTTGATTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATtat < 1:6849997/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATtat < 1:4830241/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCGGCAAGGTTGACTAAAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATtat < 2:5055594/91‑1 (MQ=255) tatttCGTCGTGCCACCCCGGCAAGGTTGACTAGAATTGAATAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATaa < 2:6970055/91‑1 (MQ=255) tatttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATaa > 1:855170/1‑91 (MQ=255) atttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAAc < 2:1995753/91‑1 (MQ=255) atttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAAc > 1:3692556/1‑91 (MQ=255) atttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAAc > 2:2558484/1‑91 (MQ=255) tttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACt < 1:3771488/91‑1 (MQ=255) tttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACt > 2:778271/1‑91 (MQ=255) tttCGTCGTCACACCCCAGCAAGGTAAAAAAGAAAAAAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACt < 2:5214130/91‑1 (MQ=11) ttCGTCGTCCCACCCCTGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TGC‑AGTCAACTACTGCCATTATAACtt < 2:6658388/91‑1 (MQ=255) ttCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACtt > 1:404403/1‑91 (MQ=255) cgtcgtCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTg < 1:2937605/91‑1 (MQ=255) gtcgtcCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGt > 2:3243659/1‑91 (MQ=255) gtcgtcCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGt > 2:1813342/1‑91 (MQ=255) tcgtcCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTa > 2:6351646/1‑91 (MQ=255) cgtcCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTag < 1:4638056/91‑1 (MQ=40) cgtcCCACCCCGGCAAGGTTGACAAGAAATGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTag < 2:2499925/91‑1 (MQ=255) cccACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGc < 1:4192285/91‑1 (MQ=37) cccACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGc > 1:2440108/1‑91 (MQ=37) cccACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGc > 2:4931459/1‑91 (MQ=37) cACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCAt < 1:1795911/91‑1 (MQ=34) cACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCAt < 1:1842878/91‑1 (MQ=34) cACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCAt < 1:6600187/91‑1 (MQ=34) aCCCCGGCAAGGTTGACTAGAATTGACAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATa > 2:2164934/1‑91 (MQ=18) aCCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATa > 2:887876/1‑91 (MQ=33) aCCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATa < 1:3571522/91‑1 (MQ=33) ccccGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAg > 2:4893527/1‑91 (MQ=32) cccGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGa < 2:1396841/91‑1 (MQ=31) tAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttc < 1:3373249‑M2/91‑46 (MQ=255) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctac < 1:5658981‑M2/91‑49 (MQ=255) aTTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTC‑AGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctaca < 1:1953026‑M2/91‑50 (MQ=255) aaaaGCTTGTTACAAGCGCATTTTCAATTCTAGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagaca < 2:4741940‑M2/91‑54 (MQ=255) aaaGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCttt < 1:3247135/91‑1 (MQ=32) aaaGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCttt < 1:5945284/91‑1 (MQ=32) aaaGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCttt < 2:4559146/91‑1 (MQ=32) ttGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGaa > 1:1019673/1‑91 (MQ=38) tGTTCCAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCACTATAACTTTGTAGAGCATAGAACATTGATGTATGTCTCAGGCTCTTTACGAAt > 1:2883899/1‑91 (MQ=255) tGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAGCATTGATTTATGTCTCAGGCTCTTTACGAAt > 1:6485750/1‑91 (MQ=255) tGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAAt > 1:3955834/1‑91 (MQ=39) tGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAAt > 2:2361239/1‑91 (MQ=39) gTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATc > 1:2174001/1‑91 (MQ=40) ttACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCa < 1:2374278/91‑1 (MQ=255) tACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCaa < 1:4596543/91‑1 (MQ=255) aGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATAcc > 2:6710883/1‑91 (MQ=255) aGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATAcc < 1:1718067/91‑1 (MQ=255) gCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGGATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCt < 1:5253077/91‑1 (MQ=255) aaTTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGa < 1:2772897/91‑1 (MQ=255) atattCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGAc > 2:3378045/4‑91 (MQ=255) ttttCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACg < 1:6711788/91‑1 (MQ=255) ttttCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACg < 1:3033715/91‑1 (MQ=255) ttttCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACg < 2:1461540/91‑1 (MQ=255) tttCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGc < 2:4341853/91‑1 (MQ=255) ttCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCa > 2:2674684/1‑91 (MQ=255) cG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCAtt > 1:2602289/1‑91 (MQ=255) g‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCAttt < 1:5895493/91‑1 (MQ=255) ttC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCAtttt < 1:6167169/91‑1 (MQ=255) ttC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCAtttt > 2:1112612/1‑91 (MQ=255) c‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCAtttttt > 2:4262333/1‑91 (MQ=255) c‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGACtttttt > 2:5410486/1‑91 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagagattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaat > 2:3993336‑M2/1‑7 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaat < 2:346497‑M2/91‑85 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaat < 2:388825‑M2/91‑85 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaat > 2:828406‑M2/1‑7 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaat < 2:1572169‑M2/91‑85 (MQ=255) aGTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaacgcaagttcgggtgggacgacgaaataaat < 2:4372619‑M2/91‑85 (MQ=255) gTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatt < 1:1472724‑M2/91‑86 (MQ=255) gTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatt > 1:4243130‑M2/1‑6 (MQ=255) gTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatt < 1:4919213‑M2/91‑86 (MQ=255) gTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatt < 2:5340514‑M2/91‑86 (MQ=255) gTCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatt > 2:5307831‑M2/1‑6 (MQ=255) gTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCt < 2:3659844/91‑1 (MQ=255) gTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCt < 1:234687/91‑1 (MQ=255) gTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCt < 1:4981420/91‑1 (MQ=255) tCAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattt > 1:5680940‑M2/1‑5 (MQ=255) cAACcttgccggcggggccccaacaatgacaaattgcattcccaatttctacagacaatgcaagttggggtgggacgacgaaataattttt < 2:284892‑M2/91‑88 (MQ=255) cAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatttt < 2:2100304‑M2/91‑88 (MQ=255) cAACcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaatttt < 1:3836067‑M2/91‑88 (MQ=255) aaCTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTgca < 1:1341092/91‑1 (MQ=255) aaCTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTgca < 1:3981509/91‑1 (MQ=255) actactGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTgcaa > 1:721452/1‑91 (MQ=255) aCcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgc < 2:3090168‑M2/91‑90 (MQ=255) aCcttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgc < 1:5738704‑M2/91‑90 (MQ=255) ctactGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTgcaag > 2:6544671/1‑91 (MQ=255) ctactGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTgcaag > 1:512105/1‑91 (MQ=255) ccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcg < 2:1257254‑M2/91‑91 (MQ=255) ccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcg > 1:4427599‑M2/1‑1 (MQ=255) | ATTTTCGTAAAATTTATTTCGTCGTCCCACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTC‑AGTCAACTACTGCCATTATAACTTTGTAGAGCATAGAACATTGATTTATGTCTCAGGCTCTTTACGAATCAATACCTCGACGCATTTTTTCTGCAAG > USA300TCH1516_ALE/1072188‑1072368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |