New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1205323NA (NA)46 (0.140)
+AGCGAA		 11/148 NT 24.9% intergenic (‑204/‑365) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
?USA300TCH1516_ALE = 2071901 150 (0.420)intergenic (+396/+177) USA300HOU_RS10445/USA300HOU_RS10450 hypothetical protein/hypothetical protein

Only 100 of 372 total aligned reads displayed.

AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA  >  USA300TCH1516_ALE/1205234‑1205413
                                                                                         |                                                                                          
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          <  1:10790/91‑1 (MQ=32)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          >  1:4624660/1‑91 (MQ=32)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          >  1:4925404/1‑91 (MQ=32)
 aaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAgg                                                                                          <  1:1447899/91‑1 (MQ=32)
  aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAggg                                                                                         <  1:2551765/91‑1 (MQ=33)
   aTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGa                                                                                        >  2:2691681/1‑91 (MQ=34)
     tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAcc                                                                                      >  1:749999/1‑91 (MQ=37)
      aCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAccc                                                                                     >  2:6381245/1‑91 (MQ=38)
       cATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCca                                                                                    >  2:4953370/1‑91 (MQ=39)
          tttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACtcatca                                                                                 <  1:2957936/90‑1 (MQ=255)
          gTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca                                                                                 <  2:3906185/91‑1 (MQ=255)
           ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat                                                                                <  1:2459886/91‑1 (MQ=255)
           ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatcat                                                                                <  1:5047442/91‑1 (MQ=255)
            tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCTAGTCGAAGACCGAGGCTGAGACGGCACACTAGGAAGGGACCCatcatc                                                                               <  1:5562030/91‑1 (MQ=255)
             aaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCAtcatca                                                                              >  1:1839140/1‑91 (MQ=255)
               tACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaa                                                                            <  1:3093311/91‑1 (MQ=255)
               tACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaa                                                                            >  2:913811/1‑91 (MQ=255)
                 ctacgtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaaa                                                                          >  2:6014452/5‑91 (MQ=255)
                  ggagtaTTAATGGCGAGACTGCTGAGGGAGCAGGGCCAGTGGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCAATCATCAAAAAt                                                                         <  2:1088289/89‑1 (MQ=17)
                   tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                        >  2:337022/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGTAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  1:5309896/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  2:3716291/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  2:1288428/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  1:1109016/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  1:216718/1‑91 (MQ=255)
                    agtaTTAATGGCGAGACTCCTGAGGGAGCAGCGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc                                                                       >  1:6817073/1‑91 (MQ=255)
                      taTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                     >  1:3001443/1‑91 (MQ=255)
                       aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                    >  2:5763504/1‑91 (MQ=255)
                         tAATGGCGAGACTCCTGGGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCGCCCTAGGAAGGGACCCATCATCAAAAATTCTAttt                                                                  <  1:4951461/91‑1 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaaat                                                                <  2:2996654/91‑5 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAtaaat                                                                <  2:3460508/91‑5 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                >  2:2465428/1‑91 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                >  2:4175111/1‑91 (MQ=255)
                           aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAACGAGGCTGAGACGGCACCATAGGAAGGGACCCATCATCAAAAATTCTATTtat                                                                <  2:322166/91‑1 (MQ=255)
                            tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtata                                                               <  1:1509937/91‑1 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGTAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  1:6489368/91‑1 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              >  1:2588921/1‑91 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  2:4676656/91‑1 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  1:3315945/91‑1 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  2:5257857/91‑1 (MQ=255)
                             ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAg                                                              <  2:691199/91‑1 (MQ=255)
                               cGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGaa                                                            >  2:654529/1‑91 (MQ=255)
                                 agaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAtt                                                          >  2:4289137/1‑91 (MQ=255)
                                  gaCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAttt                                                         >  1:853798/1‑91 (MQ=255)
                                    cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                       >  2:5168025/1‑91 (MQ=255)
                                     tCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTAc                                                      <  1:3209173/91‑1 (MQ=255)
                                        tGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGt                                                   <  1:3670489/91‑1 (MQ=255)
                                         gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTa                                                  >  1:422132/1‑91 (MQ=255)
                                            ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATGTTACAGTAAtg                                               >  2:6997798/1‑91 (MQ=255)
                                              aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                             <  2:1696514/91‑1 (MQ=255)
                                              aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgtg                                             <  2:4433947/91‑1 (MQ=255)
                                               gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc                                            <  1:473145/91‑1 (MQ=255)
                                                cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGcc                                           >  1:5409844/1‑91 (MQ=255)
                                                 aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCa                                          <  2:3566480/91‑1 (MQ=255)
                                                 aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCa                                          >  2:4516255/1‑91 (MQ=255)
                                                   tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGa                                        <  1:1725336/91‑1 (MQ=255)
                                                   tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGa                                        <  1:795975/91‑1 (MQ=255)
                                                    gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGAt                                       <  2:3104600/91‑1 (MQ=255)
                                                    gCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGAt                                       <  2:464366/91‑1 (MQ=255)
                                                       aGTCGAAGACCGAGTCTGAGACGGCACCCTAGGAAGGGGCCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                    <  1:5803736/91‑1 (MQ=255)
                                                       aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                    <  1:3628282/91‑1 (MQ=255)
                                                       aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                    <  1:3383102/91‑1 (MQ=255)
                                                            aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAg                               >  1:2804441/1‑91 (MQ=255)
                                                            aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAg                               <  1:5600759/91‑1 (MQ=255)
                                                            aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAg                               >  1:1242223/1‑91 (MQ=255)
                                                             aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              <  1:340708/91‑1 (MQ=255)
                                                             aGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                              <  2:1897806/91‑1 (MQ=255)
                                                              gACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg                             >  2:2620353/1‑91 (MQ=255)
                                                                ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                           >  1:6352408/1‑91 (MQ=39)
                                                                ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                           >  1:485019/1‑91 (MQ=39)
                                                                 cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                          <  2:8338/91‑1 (MQ=38)
                                                                 cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                          >  2:6179817/1‑91 (MQ=38)
                                                                 cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                          >  1:2078049/1‑91 (MQ=38)
                                                                 cGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAg                          <  1:451196/91‑1 (MQ=38)
                                                                  gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGc                         <  2:3809924/91‑1 (MQ=35)
                                                                    ggCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCa                       >  2:5926885/1‑91 (MQ=33)
                                                                     gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                      >  1:6187479/1‑91 (MQ=33)
                                                                     gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                      >  2:2038347/1‑91 (MQ=33)
                                                                     gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                      >  1:2279245/1‑91 (MQ=34)
                                                                     gCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                      >  1:2781836/1‑91 (MQ=34)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     >  1:3768416/1‑91 (MQ=33)
                                                                      cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                     >  1:4378322/1‑91 (MQ=34)
                                                                       tGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTc                    <  1:3977180/91‑1 (MQ=34)
                                                                       tGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTc                    >  2:3343578/1‑91 (MQ=34)
                                                                        gagaCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCa                   >  2:5050855/1‑91 (MQ=34)
                                                                          gaCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                 >  2:2319692/1‑91 (MQ=33)
                                                                          gaCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                 >  2:5884657/1‑91 (MQ=34)
                                                                           aCGGCACCCTAGGAAGTGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                <  2:2852574/91‑1 (MQ=18)
                                                                           aCGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                <  2:2588814/91‑1 (MQ=34)
                                                                            cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATAc               <  2:1374075/91‑1 (MQ=33)
                                                                            cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATAc               <  1:6599267/91‑1 (MQ=34)
                                                                              gCACCCTAGGAAGGGACCCATCATCCAAAATTCTCTTTATAGAATTTTACTGTAATGTGCCAGATGGGCATAGCGAAGCCATGCAATACGa             >  2:305283/1‑91 (MQ=11)
                                                                               cACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa            <  1:5914040/91‑1 (MQ=34)
                                                                                 cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGt          <  1:5259086/91‑1 (MQ=34)
                                                                                 cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGt          >  1:3555218/1‑91 (MQ=34)
                                                                                  ccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTa         <  1:4175111/91‑1 (MQ=34)
                                                                                      ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt     <  1:5219071/91‑1 (MQ=34)
                                                                                        aaGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtat   >  1:934804/1‑91 (MQ=34)
                                                                                        aaGGGACCCATCATCAAAAATTCTAATTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCGATACGAAGAATTGtat   >  2:6670585/1‑91 (MQ=255)
                                                                                         aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtata  <  1:3158874/91‑1 (MQ=34)
                                                                                         |                                                                                          
AAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATA  >  USA300TCH1516_ALE/1205234‑1205413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.