| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1205323 | NA (NA) | 46 (0.140) +AGCGAA |
11/148 | NT | 24.9% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | = 2071901 | 150 (0.420) | intergenic (+396/+177) | USA300HOU_RS10445/USA300HOU_RS10450 | hypothetical protein/hypothetical protein | |||||
Only 100 of 330 total aligned reads displayed.
ATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAA > USA300TCH1516_ALE/2071811‑2071991 | attttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGc > 1:2814320‑M2/6‑91 (MQ=255)attttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGc > 1:332206‑M2/6‑91 (MQ=255) tttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCga < 1:6920667‑M2/88‑1 (MQ=255) ttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgag > 2:5643268‑M2/3‑91 (MQ=255) ttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgag < 2:1749563‑M2/89‑1 (MQ=255) ttACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgag < 1:631297‑M2/89‑1 (MQ=255) tACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgaga > 2:4802172‑M2/2‑91 (MQ=255) aCATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGAc > 1:5600111/1‑91 (MQ=39) cATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACt < 2:436836/91‑1 (MQ=37) aTTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTc < 2:2449074/91‑1 (MQ=38) aTTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTCCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTc < 2:6757752/91‑1 (MQ=255) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACGTGTTAATACGTAGTATT‑AATGGCGAGACTCCTGa < 2:4152772/91‑1 (MQ=255) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGa < 1:445817/91‑1 (MQ=39) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGa < 2:6312474/91‑1 (MQ=39) aTGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGa < 1:1290648/91‑1 (MQ=39) gtgCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAgg < 1:4950984/91‑1 (MQ=38) gtgCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAgg > 2:160447/1‑91 (MQ=39) gCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGa < 1:1508599/91‑1 (MQ=37) cAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAg < 1:3217914/91‑1 (MQ=35) aaGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGc < 1:9337/91‑1 (MQ=34) aGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCa < 1:2600250/91‑1 (MQ=34) aGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCa < 2:3155886/91‑1 (MQ=34) tGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTg < 1:152995/91‑1 (MQ=34) tGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTg < 1:1679998/91‑1 (MQ=34) gggCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGc < 2:5767077/91‑1 (MQ=33) ggCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGcc < 1:732582/91‑1 (MQ=34) ggCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGcc > 1:6730463/1‑91 (MQ=34) ggCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGcc < 1:1864172/91‑1 (MQ=34) cAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCTGTGCCAg > 1:5568437/1‑91 (MQ=21) cAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 1:2001926/1‑91 (MQ=34) cAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 1:45604/1‑91 (MQ=34) aaGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTc > 1:285486/1‑91 (MQ=34) aaGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTc > 1:878343/1‑91 (MQ=34) aGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg > 1:54111/1‑91 (MQ=34) tgtCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGaa < 1:1231737/91‑1 (MQ=34) tgtCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGaa < 2:2207060/91‑1 (MQ=33) cTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc < 2:3619907/91‑1 (MQ=34) cTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 2:2664675/1‑91 (MQ=34) cTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc < 1:1948546/91‑1 (MQ=34) tATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCa > 1:6589844/1‑91 (MQ=35) aTTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACATAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCaa > 2:6475062/1‑91 (MQ=37) tttttAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAgg < 1:5778717/91‑1 (MQ=38) ttttAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGc < 2:5921346/91‑1 (MQ=37) tttAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCt < 1:51162/91‑1 (MQ=35) tttAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCt < 2:69786/91‑1 (MQ=35) ttAAAAGTATTTTAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTg < 2:4465975/91‑1 (MQ=21) tAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTga < 1:6790251/91‑1 (MQ=33) tAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTga < 1:3958993/91‑1 (MQ=33) aaaaGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTgag > 1:625573/1‑91 (MQ=32) aaaGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCATGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTgaga > 2:3456307/1‑91 (MQ=14) ttACACGTTAATACGTAGTATT‑AATGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtct > 1:3445950‑M2/1‑28 (MQ=255) tACATGTTAATACGTAGTATTGAATGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtct > 1:1005257‑M2/1‑28 (MQ=255) tACATGTTAATACGTAGTATT‑AATGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctc > 1:1385579‑M2/1‑27 (MQ=255) tgtatggCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtatt > 1:4223063‑M2/4‑8 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 2:719649‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa > 2:5395881‑M2/1‑6 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 2:1365517‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 2:6121478‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa > 2:3936170‑M2/1‑6 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 2:3059271‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 1:3513749‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 1:214227‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 1:3055154‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaa < 1:2186289‑M2/91‑86 (MQ=255) aaTGGCttcgctttcctagggtgccgtctcagcctcggtcatcgactggcaccgctccctcaggagtctcgccattaatactacctattaa < 1:5829225‑M2/91‑86 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 1:1470183‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 1:4184770‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac > 1:4286128‑M2/1‑5 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 2:3283670‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac > 1:2442987‑M2/1‑5 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 1:5507345‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 2:2841650‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac < 1:5729125‑M2/91‑87 (MQ=255) aTGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaac > 1:175343‑M2/1‑5 (MQ=255) tGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaaca < 1:6372255‑M2/91‑88 (MQ=255) tGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaaca < 1:4705146‑M2/91‑88 (MQ=255) tGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaaca > 1:649941‑M2/1‑4 (MQ=255) tGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaaca > 1:3917025‑M2/1‑4 (MQ=255) ggCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacat > 1:2398965‑M2/1‑3 (MQ=255) ggCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacat > 1:3287067‑M2/1‑3 (MQ=255) ggCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacat > 2:4274558‑M2/1‑3 (MQ=255) ggCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacat < 2:1478635‑M2/91‑89 (MQ=255) gcttcgcttccctagggggccgtcccagcctccgtcatcgactggcactgcgccctcaggagtctcgccattaatactacgtattaacatg > 2:6612104‑M2/1‑2 (MQ=255) gCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg < 2:3964734‑M2/91‑90 (MQ=255) gCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg < 1:3478070‑M2/91‑90 (MQ=255) gCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg < 2:1199176‑M2/91‑90 (MQ=255) gCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg > 1:5192554‑M2/1‑2 (MQ=255) gCttcgctttcctagggtgccgtctcagcatcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg > 1:6176193‑M2/1‑2 (MQ=255) gCttcgctttcctagggtgccgtcgcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatg > 1:6626050‑M2/1‑2 (MQ=255) cttcgctttccttgggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:4619961‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt < 1:4771016‑M2/91‑91 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:1446284‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:6881974‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:1863523‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt < 1:22797‑M2/91‑91 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt < 2:3828591‑M2/91‑91 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt < 2:5099936‑M2/91‑91 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:5044906‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt > 2:4879701‑M2/1‑1 (MQ=255) cttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcgccattaatactacgtattaacatgt < 1:3703778‑M2/91‑91 (MQ=255) | ATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTAAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAA > USA300TCH1516_ALE/2071811‑2071991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |