BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	283 (0.790)	33 (0.100) +GTTTT	7/150	NT	11.0%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1918540	287 (0.800)	33 (0.100) +GTTTT	7/150	NT	11.0%	intergenic (‑258/+240)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 372 total aligned reads displayed.

AACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGG  >  USA300TCH1516_ALE/1456859‑1457038

tctagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaa                                                                                           <  1:2001530‑M1/2‑1 (MQ=255)

aaCGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaa                                                                                           >  2:3535917/1‑91 (MQ=255)

aaCGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaa                                                                                           <  1:5127143/91‑1 (MQ=255)

  tagcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacaaaa                                                                                         >  1:3041036‑M1/88‑91 (MQ=255)

  cGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaaa                                                                                         <  1:6043475/91‑1 (MQ=255)

   agcacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAg                                                                                        >  1:3819636‑M1/87‑91 (MQ=255)

    tttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGc                                                                                       <  2:6353808/91‑1 (MQ=255)

    tttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGc                                                                                       <  1:1879347/91‑1 (MQ=255)

     ttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAACAGACAATATACGTTATAACAACGTTTTATAAAAGCa                                                                                      >  1:1510738/1‑91 (MQ=255)

     ttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCa                                                                                      >  1:5027814/1‑91 (MQ=255)

     ttCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCa                                                                                      >  2:6190170/1‑91 (MQ=255)

     cacgtagagatgcatttttttttttttttgtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCa                                                                                      <  2:1766376‑M1/7‑1 (MQ=255)

     cacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCa                                                                                      <  2:4148587‑M1/7‑1 (MQ=255)

     cacgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttatttttacaaaaaacAAAAGCa                                                                                      >  2:4025467‑M1/85‑91 (MQ=255)

      tCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAg                                                                                     >  1:216961/1‑91 (MQ=255)

      tCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTCTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAg                                                                                     <  1:5785556/91‑1 (MQ=255)

      acgtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAg                                                                                     >  1:4098662‑M1/84‑91 (MQ=255)

       cGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGt                                                                                    <  2:2586412/91‑1 (MQ=255)

       cGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGt                                                                                    >  1:226967/1‑91 (MQ=255)

        gtagagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTa                                                                                   <  2:1948509‑M1/10‑1 (MQ=255)

        gTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                   <  1:2051389/91‑1 (MQ=255)

          tCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTaaa                                                                                 <  1:6973812/91‑1 (MQ=255)

          agagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTaaa                                                                                 <  2:296719‑M1/12‑1 (MQ=255)

           gagatgcattttttgtgacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAAc                                                                                <  1:6816289‑M1/13‑1 (MQ=255)

            ttgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAcc                                                                               >  1:1773727/1‑91 (MQ=255)

            ttgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAcc                                                                               >  1:135807/1‑91 (MQ=255)

             tgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAccc                                                                              >  1:6594271/1‑91 (MQ=255)

              gctgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATCCGTTATATCAACGTTTTATAAAAGCAGTAAACCCt                                                                             >  2:501806/3‑91 (MQ=255)

                 ggATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTAc                                                                          >  2:6542983/1‑91 (MQ=255)

                    ttGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGac                                                                       >  1:534550/1‑91 (MQ=255)

                       gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACATCGTTTTATAAAAGCAGTAAACCCTTACGACACt                                                                    <  1:6933930/91‑1 (MQ=255)

                       gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaaa                                                                                         <  1:2799182/70‑1 (MQ=255)

                        tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACtt                                                                   <  1:25696/91‑1 (MQ=255)

                        tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACtt                                                                   <  1:478571/91‑1 (MQ=255)

                          aTTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTa                                                                 <  1:1422275/91‑1 (MQ=255)

                           ttttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAg                                                                >  2:1488897/1‑91 (MQ=255)

                           ttttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAg                                                                >  2:3797488/1‑91 (MQ=255)

                           gacaatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAACCCTTACGACACTTTAg                                                                >  1:5901331‑M1/63‑91 (MQ=255)

                              aatggtagaaccttttctgaaccatacgcatagcgtatggttttctttttacaaaaaacAAAAGCAGTAAACCCTTACGACACTTTAGGtt                                                             >  1:6649341‑M1/60‑91 (MQ=255)

                               cAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACATCTTTTTATTAAAGCAGTAACCCCGTACGACACTTTAGGttt                                                            <  2:4800466/91‑1 (MQ=255)

                                aaaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTa                                                           >  2:3663263/1‑91 (MQ=255)

                                aaaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTa                                                           >  1:3671924/1‑91 (MQ=255)

                                aaaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTa                                                           >  1:2845287/1‑91 (MQ=255)

                                     ttCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCt                                                      <  2:3704583/91‑1 (MQ=255)

                                     ttCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCt                                                      <  2:3241948/91‑1 (MQ=255)

                                      tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                     <  2:2795808/91‑1 (MQ=255)

                                      tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                     <  1:3925384/91‑1 (MQ=255)

                                      tCCCCTTTTAGATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGGACACCCTTACGACACTTTAGGGTTACTGCtt                                                     <  1:6406870/91‑1 (MQ=255)

                                       ccccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                    >  1:4185093/1‑91 (MQ=255)

                                       ccccTTTTATACGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCttt                                                    <  2:6977889/91‑1 (MQ=255)

                                          cTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGt                                                 <  1:954845/91‑1 (MQ=255)

                                          cTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGt                                                 <  1:3133197/91‑1 (MQ=255)

                                          cTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGCTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTCTTGt                                                 >  2:772150/1‑91 (MQ=255)

                                           ttttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGCTTTACTGCTTTTGtt                                                >  2:5389632/1‑91 (MQ=255)

                                             ttATATGTCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                              <  1:5576738/91‑1 (MQ=255)

                                             ttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                              <  1:4042940/91‑1 (MQ=255)

                                             ttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttt                                              <  1:3300650/91‑1 (MQ=255)

                                               atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGtttttt                                            <  1:895620/91‑1 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         <  2:1182990/91‑1 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         <  2:1614063/91‑1 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         <  2:2349320/91‑1 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         >  2:2476805/1‑91 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         <  2:534550/91‑1 (MQ=255)

                                                  tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa                                         <  1:1659601/91‑1 (MQ=255)

                                                   gCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaa                                        >  1:5724633/1‑91 (MQ=255)

                                                    cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                       <  1:5493151/91‑1 (MQ=255)

                                                    cccGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                       >  1:1813819/1‑91 (MQ=255)

                                                       gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg                                    <  2:4543050/91‑1 (MQ=255)

                                                        tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCtt                                                     >  2:919273/1‑73 (MQ=255)

                                                           aaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaaa                                >  2:3393021/1‑91 (MQ=255)

                                                             gACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAcc                              >  2:6362931/1‑91 (MQ=255)

                                                             gACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAcc                              <  1:4675826/91‑1 (MQ=255)

                                                              aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa                             <  1:4442012/91‑1 (MQ=255)

                                                               cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAACCCAt                            >  2:5620737/1‑91 (MQ=255)

                                                                   ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                        >  2:5502775/1‑91 (MQ=255)

                                                                    taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGca                       <  2:4351988/91‑2 (MQ=255)

                                                                      cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcata                     <  2:2865969/91‑4 (MQ=255)

                                                                       gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTTTTTTTTGTAAAAAGAAAACCATACGCTATg                    >  2:6817984/1‑91 (MQ=255)

                                                                       gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag                    <  2:3870258/91‑5 (MQ=255)

                                                                        ttATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGc                   <  1:2721630/91‑1 (MQ=255)

                                                                          ataACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGt                 <  2:4943660/91‑1 (MQ=255)

                                                                             acaacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTACGCGTATg              >  1:5527322/1‑91 (MQ=255)

                                                                              ctacGTTTTATAAAAGCAGTAAACCCTTAAGACACTTTAGGTTTACTGCTTTTGTTTTATGTAACAAGAAAATCACACGCTATGAGTAggg             >  1:5846395/3‑91 (MQ=255)

                                                                              caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATgg             >  2:5709239/1‑91 (MQ=255)

                                                                              caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATgg             >  1:6275451/1‑91 (MQ=255)

                                                                              caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATgg             >  2:2169720/1‑91 (MQ=255)

                                                                               aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGt            <  2:504423/91‑1 (MQ=255)

                                                                                acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt           >  1:1111023/1‑91 (MQ=255)

                                                                                acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt           >  1:859056/1‑91 (MQ=255)

                                                                                acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt           >  1:3781895/1‑91 (MQ=255)

                                                                                acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGtt           >  1:4778509/1‑91 (MQ=255)

                                                                                 cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTc          <  2:4410909/91‑1 (MQ=255)

                                                                                  gTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCa         <  1:3420199/91‑1 (MQ=255)

                                                                                   ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAg        <  1:1019529/91‑1 (MQ=255)

                                                                                     ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaa      <  1:263330/91‑1 (MQ=255)

                                                                                     ttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaa      >  2:863319/1‑91 (MQ=255)

                                                                                      tataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaa     <  2:5895655/91‑1 (MQ=255)

                                                                                       ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa    >  1:1291084/1‑91 (MQ=255)

                                                                                       ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaaaa    >  2:3333913/1‑91 (MQ=255)

                                                                                        taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAg   >  2:6000850/1‑91 (MQ=255)

AACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGG  >  USA300TCH1516_ALE/1456859‑1457038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.