BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1456948 =	283 (0.790)	33 (0.100) +GTTTT	7/150	NT	11.0%	intergenic (‑62/‑182)	USA300HOU_RS07230/USA300HOU_RS07235	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1918540	287 (0.800)	33 (0.100) +GTTTT	7/150	NT	11.0%	intergenic (‑258/+240)	USA300HOU_RS07235/USA300HOU_RS09510	hypothetical protein/hypothetical protein

Only 100 of 370 total aligned reads displayed.

ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT  >  USA300TCH1516_ALE/1918451‑1918630

atttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAa                                                                                           <  2:1204959‑M2/91‑2 (MQ=255)

atttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTATTACAAa                                                                                           <  1:5538907‑M2/91‑2 (MQ=255)

 tttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaa                                                                                          >  2:2787911‑M2/1‑89 (MQ=255)

     ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaaca                                                                                      <  1:3535917‑M2/91‑7 (MQ=255)

     ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaaca                                                                                      <  1:4200740‑M2/91‑7 (MQ=255)

       cTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaa                                                                                    >  2:5319303‑M2/1‑83 (MQ=255)

       cTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaa                                                                                    >  1:5093631‑M2/1‑83 (MQ=255)

          gCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagc                                                                                 <  2:5711299‑M2/91‑12 (MQ=255)

           cACGTTGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTCCAAaaaacaaaagca                                                                                <  2:6866982‑M2/91‑13 (MQ=255)

           cACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagca                                                                                <  2:1510738‑M2/91‑13 (MQ=255)

            aCGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcag                                                                               >  1:4038758‑M2/1‑78 (MQ=255)

              gTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagta                                                                             <  2:1948509‑M2/91‑16 (MQ=255)

               tAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgt                                                                            >  2:2364200/1‑91 (MQ=255)

               tAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgt                                                                            <  1:1074630/91‑1 (MQ=255)

                agcgaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgtt                                                                           <  2:6177748/88‑1 (MQ=255)

                agagATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaa                                                                           >  1:6032313‑M2/1‑74 (MQ=255)

                 gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac                                                                          <  1:1837818‑M2/91‑19 (MQ=255)

                 gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttg                                                                          <  1:2899687/91‑1 (MQ=255)

                 gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTATGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttg                                                                          >  1:6912888/1‑91 (MQ=255)

                  agaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgt                                                                         >  2:864697/1‑91 (MQ=255)

                      gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTtata                                                                     >  2:3633448/1‑91 (MQ=255)

                       cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                    <  2:2088366/91‑1 (MQ=255)

                       cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                    <  1:6585932/91‑1 (MQ=255)

                       cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg                                                                    >  1:5163616/1‑91 (MQ=255)

                        aTTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTCACAATTAAAGAGCCAACCGTTGTTATAGt                                                                   <  1:4264116/91‑1 (MQ=255)

                         ttttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc                                                                  <  2:3379152/91‑1 (MQ=255)

                          tttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCt                                                                 >  2:3470668/1‑91 (MQ=255)

                             ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc                                                              >  1:3933573/1‑91 (MQ=255)

                             ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc                                                              <  1:5460873/91‑1 (MQ=255)

                              tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACa                                                             <  1:1007124/91‑1 (MQ=255)

                              tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACa                                                             >  2:2977340/1‑91 (MQ=255)

                              tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACa                                                             <  1:2761605/91‑1 (MQ=255)

                                tgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacacttta                                                           >  1:4780020‑M2/1‑58 (MQ=255)

                                tgACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt                                                           >  2:3819963/1‑91 (MQ=255)

                                   cAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt                                                        <  2:6293989/91‑1 (MQ=255)

                                         tAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctc                                                  <  1:2262528/91‑1 (MQ=255)

                                          aGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcc                                                 <  2:2708130/91‑1 (MQ=255)

                                          aGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcc                                                 <  2:6416348/91‑1 (MQ=255)

                                           gAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct                                                <  1:3716884/91‑1 (MQ=255)

                                           gAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct                                                <  2:291844/91‑1 (MQ=255)

                                            aaCCTTTTCTGAACCATACGCATAGCTTTTGGTTTTCTTTTTACTATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                               <  2:3211598/91‑1 (MQ=255)

                                            aaCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                               <  2:170685/91‑1 (MQ=255)

                                            aaCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                               <  1:2668127/91‑1 (MQ=255)

                                            aaCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                               <  1:765835/91‑1 (MQ=255)

                                            aaCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc                                               <  1:4686529/91‑1 (MQ=255)

                                             aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct                                              >  1:6226278/1‑91 (MQ=255)

                                             aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct                                              >  2:611776/1‑91 (MQ=255)

                                             aCCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGCTCttta                                              >  1:2576253‑M2/1‑87 (MQ=255)

                                               cTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTTTCGAGCCAACCGTTGTTGTAGTCTAACAATGGTTGGCTCCTCttt                                            >  2:3939265/1‑90 (MQ=25)

                                                ttttCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTAt                                           >  1:1381329/1‑91 (MQ=255)

                                                   tCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTAtttt                                        >  1:6677988/1‑91 (MQ=255)

                                                    cTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa                                       >  2:5100140/1‑91 (MQ=255)

                                                    cTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa                                       >  2:2233011/1‑91 (MQ=255)

                                                     tGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAt                                      >  1:2120149/1‑91 (MQ=255)

                                                      gAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtg                                     <  1:1294121/91‑1 (MQ=255)

                                                        aCCGTACGCATAGCGTATGGTTTTCTTTTTAGAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtg                                   <  1:6499093/91‑1 (MQ=255)

                                                         ccATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGc                                  <  1:3009378/91‑1 (MQ=255)

                                                         ccATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGc                                  >  2:1129484/1‑91 (MQ=255)

                                                          cATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt                                 >  1:1208203/1‑91 (MQ=255)

                                                          cATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt                                 <  1:4418614/91‑1 (MQ=255)

                                                          cATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt                                 <  2:4638724/91‑1 (MQ=255)

                                                          cATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt                                 <  2:1273711/91‑1 (MQ=255)

                                                          cATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt                                 <  2:5305757/91‑1 (MQ=255)

                                                           aTACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa                                <  1:3225368/91‑1 (MQ=255)

                                                             aCGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCTTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                              >  1:5446725/1‑91 (MQ=255)

                                                             aCGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                              <  2:5367364/91‑1 (MQ=255)

                                                             aCGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                              >  2:4961627/1‑91 (MQ=255)

                                                             aCGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa                              <  1:6972085/91‑1 (MQ=255)

                                                              cGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaaa                             >  1:2402443/1‑91 (MQ=255)

                                                               gCATAGCGTATAGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaaaa                            <  2:6992443/91‑1 (MQ=255)

                                                                ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt                           >  2:4124903/5‑91 (MQ=255)

                                                                ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt                           >  1:5047276/5‑91 (MQ=255)

                                                                cATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATCGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt                           >  1:6804809/1‑91 (MQ=255)

                                                                cATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt                           <  2:1874900/91‑1 (MQ=255)

                                                                 aTAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt                          <  1:3819963/91‑1 (MQ=255)

                                                                   aGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTta                        >  2:4553250/1‑91 (MQ=255)

                                                                       tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg                    <  1:1707556/91‑1 (MQ=255)

                                                                       tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg                    <  2:6706738/91‑1 (MQ=255)

                                                                        aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                   <  2:181944/91‑1 (MQ=255)

                                                                        aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                   >  2:5877624/1‑91 (MQ=255)

                                                                        aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                   <  1:2010422/91‑1 (MQ=255)

                                                                        aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc                   <  2:5766869/91‑1 (MQ=255)

                                                                         tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCa                  >  1:159410/1‑91 (MQ=255)

                                                                          ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa                 <  2:842881/91‑1 (MQ=255)

                                                                           gTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTCGCTCCTCTTATTTTATGTGCTAAAAATTTACAGGCAAt                <  1:6718747/91‑1 (MQ=255)

                                                                             tttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAttt              <  1:5929914/91‑1 (MQ=255)

                                                                             tttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAttt              >  2:2543387/1‑91 (MQ=255)

                                                                              ttCTTTTTACAATTATAGAGCCAACCGTTGTTATAGTCTAACAATAGTTGGCTCCTCTTATTTTATGTACTAAAAATTTATAGGCGAtttt             <  2:6850689/91‑1 (MQ=255)

                                                                              ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt             >  1:5895886/1‑91 (MQ=255)

                                                                              ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt             >  2:4055224/1‑91 (MQ=255)

                                                                              ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt             <  1:92700/91‑1 (MQ=255)

                                                                                cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat           <  1:6279643/91‑1 (MQ=255)

                                                                                cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat           <  1:5282562/91‑1 (MQ=255)

                                                                                 tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt          <  1:2724230/91‑1 (MQ=255)

                                                                                  ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta         <  2:5607345/91‑1 (MQ=255)

                                                                                   tttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac        <  1:1432710/91‑1 (MQ=255)

                                                                                   tttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac        <  1:6363259/91‑1 (MQ=255)

                                                                                   tttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac        <  1:68570/91‑1 (MQ=255)

                                                                                   tttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTac        <  1:3446186/91‑1 (MQ=255)

                                                                                         aTTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAt  <  1:4853422/91‑1 (MQ=255)

ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT  >  USA300TCH1516_ALE/1918451‑1918630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.