BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1765719 =	322 (0.900)	19 (0.060)	15/146	NT	6.5%	intergenic (‑26/‑377)	valS/tag	Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1
*	?	USA300TCH1516_ALE	1765753 =	250 (0.770)	19 (0.060)	15/146	NT	6.5%	intergenic (‑60/‑343)	valS/tag	Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1

Only 100 of 437 total aligned reads displayed.

TTTACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACA  >  USA300TCH1516_ALE/1765629‑1765809

acgatgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacgga                                                                                            <  2:2855940‑M1/1‑1 (MQ=255)

 ttACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAaaaaataaaaa                                                                                           <  1:4359790/91‑1 (MQ=255)

 ttACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAaaaaataaaaa                                                                                           >  1:3627377/1‑91 (MQ=255)

 ttACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAaaaaataaaaa                                                                                           <  2:42577/91‑1 (MQ=255)

 cgatgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggaa                                                                                           >  2:4503320‑M1/90‑91 (MQ=255)

 cgatgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggaa                                                                                           <  1:6895524‑M1/2‑1 (MQ=255)

  tACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAaaaaataaaaat                                                                                          <  1:3910586/91‑1 (MQ=255)

  gatgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAat                                                                                          <  1:1282041‑M1/3‑1 (MQ=255)

  gatgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAat                                                                                          <  2:1338181‑M1/3‑1 (MQ=255)

    tgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAatat                                                                                        <  1:4634849‑M1/5‑1 (MQ=255)

    tgatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAatat                                                                                        >  1:624697‑M1/87‑91 (MQ=255)

    cccATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAatat                                                                                        <  2:6523990/91‑1 (MQ=255)

    cccATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAatat                                                                                        <  1:2273508/91‑1 (MQ=255)

    cccATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAatat                                                                                        >  2:1126726/1‑91 (MQ=255)

     gatagtattggtatgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAATatc                                                                                       <  2:5802752‑M1/6‑1 (MQ=255)

     ccATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATatc                                                                                       <  2:6234621/91‑1 (MQ=255)

     ccATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATatc                                                                                       >  2:3647044/1‑91 (MQ=255)

          cttcATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATatccatcc                                                                                  <  2:4048950/91‑1 (MQ=255)

           ttcATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCt                                                                                 <  1:3234228/91‑1 (MQ=255)

            tcATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCta                                                                                <  1:1179954/91‑1 (MQ=255)

             cATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCtat                                                                               <  2:88641/91‑1 (MQ=255)

              aTAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCtata                                                                              >  1:2600796/1‑91 (MQ=255)

              aTAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCtata                                                                              >  1:4828831/1‑91 (MQ=255)

                 atgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAATATCCATCCTATATAc                                                                           >  1:471539‑M1/74‑91 (MQ=255)

                 aCGTCCCGCTTCAACTTCACGAGGATCATATATTGGTTTCATTTCCATTTGCTATACATCCTAAAAAAATAAAAATATCCATCCTATATAc                                                                           <  2:6388198/91‑1 (MQ=255)

                  tgattattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAATATCCATCCTATATACa                                                                          >  1:5087142‑M1/73‑91 (MQ=255)

                  cGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACa                                                                          <  1:3124419/91‑1 (MQ=255)

                   gTCCCGCTTCAACTTCACGAGGATGATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACaa                                                                         <  1:6623242/91‑1 (MQ=255)

                    tCCCGCTTCGACTTCACGAGTATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACaaa                                                                        <  2:3777586/91‑1 (MQ=255)

                    attattccaattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAATATCCATCCTATATACaaa                                                                        >  1:5371055‑M1/71‑91 (MQ=255)

                        acTTCAACTTCACGAGAATCATATAATAGTTTCATTTCCATTTGCTATAACTAATAAAAAAATAAAAATATCCATCCTATATACAAATAgg                                                                    <  2:5039858/90‑1 (MQ=255)

                           tCATCTTCACGTGGATTATATTTTGGTTTCATTTCCATTTGCTTTTCCTTCTAAAAAAATAAAAATATCTATCTTTTTTTTAAATAGGACg                                                                 <  2:2209876/91‑1 (MQ=255)

                           tCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACg                                                                 <  2:699529/91‑1 (MQ=255)

                            cAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACgg                                                                <  2:3523830/91‑1 (MQ=255)

                            cAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACgg                                                                >  1:5759747/1‑91 (MQ=255)

                            aattatgttaaaagagtgaatttgatattaatcatccttcttgaatataggtggtaccacggAATATCCATCCTATATACAAATAGGACgg                                                                >  2:2185182‑M1/63‑91 (MQ=255)

                             aaCTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGa                                                               <  2:2932553/91‑1 (MQ=255)

                              aCTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGat                                                              <  2:5932303/91‑1 (MQ=255)

                              aCTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGat                                                              >  2:3996008/1‑91 (MQ=255)

                               cTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTGCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGata                                                             >  2:6780162/1‑91 (MQ=255)

                               cTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGata                                                             >  1:5982767/1‑91 (MQ=255)

                               cTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGata                                                             >  2:4724985/1‑91 (MQ=255)

                               cTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGata                                                             >  2:1932470/1‑91 (MQ=255)

                                ttCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGatat                                                            >  2:247597/1‑91 (MQ=255)

                                ttCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGatat                                                            >  1:1539827/1‑91 (MQ=255)

                                 tCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATAtt                                                           <  2:6716796/91‑1 (MQ=255)

                                  cACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTc                                                          >  2:4589688/1‑91 (MQ=255)

                                    cGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCg                                                        <  1:2858555/91‑1 (MQ=255)

                                      aGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTg                                                      <  2:2659010/91‑1 (MQ=255)

                                         aTCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTa                                                   >  1:377016/1‑91 (MQ=255)

                                           cATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTacc                                                 <  1:167260/91‑1 (MQ=255)

                                            atatTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTTGTacca                                                >  1:5812798/1‑91 (MQ=255)

                                            atatTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTacca                                                >  1:6989980/1‑91 (MQ=255)

                                            atatTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTacca                                                <  2:4408765/91‑1 (MQ=255)

                                            atatTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATCCCGTGGTacca                                                <  2:3392219/91‑1 (MQ=255)

                                              atTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTaccacc                                              <  1:791229/91‑1 (MQ=255)

                                              atTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTaccacc                                              <  2:533712/91‑1 (MQ=255)

                                               ttttGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCt                                             <  1:1335962/91‑1 (MQ=255)

                                                 ttGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCtat                                           <  2:4853377/91‑1 (MQ=255)

                                                   ggTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTatat                                         <  1:1491884/91‑1 (MQ=255)

                                                    gTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATAtt                                        >  1:6180823/1‑91 (MQ=255)

                                                     tttCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTc                                       >  1:6012540/1‑91 (MQ=255)

                                                      ttCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCa                                      >  1:5263935/1‑91 (MQ=255)

                                                        cATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaag                                    >  1:2161314/1‑91 (MQ=255)

                                                        cATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaag                                    >  1:3524804/1‑91 (MQ=255)

                                                          tttCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaagaa                                  >  1:3063231/1‑91 (MQ=255)

                                                            tCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAgg                                <  1:1106733/91‑1 (MQ=255)

                                                            tCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAgg                                <  1:4414473/91‑1 (MQ=255)

                                                            tCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAgg                                >  1:4896478/1‑91 (MQ=255)

                                                             ccATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGga                               >  1:6744806/1‑91 (MQ=255)

                                                              cATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                              >  2:5513838/1‑91 (MQ=255)

                                                              cATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                              >  2:6833337/1‑91 (MQ=255)

                                                              cATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                              >  1:2471062/1‑91 (MQ=255)

                                                                  tGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGAtt                          >  1:4569240/1‑91 (MQ=255)

                                                                   gCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTa                         <  1:289504/91‑1 (MQ=255)

                                                                    cTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTaa                        >  1:337431/1‑91 (MQ=255)

                                                                    cTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTaa                        >  2:2020454/1‑91 (MQ=255)

                                                                    cTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAAAACGGAAATAAAGTGGTACCACCTATATTCAAGAAGGATGATTaa                        >  2:4910343/1‑91 (MQ=255)

                                                                     tataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAat                       <  2:6099887/91‑1 (MQ=255)

                                                                      ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                      <  1:6112177/91‑1 (MQ=255)

                                                                      ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                      <  1:3000290/91‑1 (MQ=255)

                                                                      ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                      >  2:1264280/1‑91 (MQ=255)

                                                                      ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                      <  2:1718985/91‑1 (MQ=255)

                                                                      ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                      >  2:3218362/1‑91 (MQ=255)

                                                                        aCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                              >  1:5606591/1‑81 (MQ=255)

                                                                        aCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATc                    <  1:1405524/91‑1 (MQ=255)

                                                                         cctcctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCa                   >  2:433880/1‑91 (MQ=255)

                                                                            cctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAAt                >  2:5612611/1‑91 (MQ=255)

                                                                             ctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAAtt               <  2:1836959/91‑1 (MQ=255)

                                                                             ctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAAtt               <  2:2311313/91‑1 (MQ=255)

                                                                               aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCa             <  2:3014178/91‑1 (MQ=255)

                                                                               aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCa             >  1:1041251/1‑91 (MQ=255)

                                                                               aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCa             <  2:3886903/91‑1 (MQ=255)

                                                                                aaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCAc            >  1:1989833/1‑91 (MQ=255)

                                                                                  aaaataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCActc          <  2:5403936/91‑1 (MQ=255)

                                                                                   aaataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCActct         >  2:5122472/1‑91 (MQ=255)

                                                                                    aataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCtt        >  1:166088/1‑91 (MQ=255)

                                                                                     acaaaaataTCCATCCCATATACACATCGGACGGATATTCCGTGGTACCACCTACATTCAAGAAGGATGCTTAATATCAAATCCACTCttt       >  2:1647360/3‑91 (MQ=255)

                                                                                        aaaataTCCATCCTATATACAAATAGGACGGATATTTTTATTTTCTTTTTTTTTTTTTGAAGGATGATTAATATAAAATTCACTCTTTTaa    >  2:543956/1‑91 (MQ=255)

                                                                                        aaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTaa    >  2:4451448/1‑91 (MQ=255)

TTTACCCATTCTTCATAACGTCCCGCTTCAACTTCACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACA  >  USA300TCH1516_ALE/1765629‑1765809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.