BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1765719 =	322 (0.900)	19 (0.060)	15/146	NT	6.5%	intergenic (‑26/‑377)	valS/tag	Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1
*	?	USA300TCH1516_ALE	1765753 =	250 (0.770)	19 (0.060)	15/146	NT	6.5%	intergenic (‑60/‑343)	valS/tag	Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1

Only 100 of 384 total aligned reads displayed.

CACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGTG  >  USA300TCH1516_ALE/1765663‑1765843

cACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTc                                                                                            <  1:2603441/91‑1 (MQ=255)

cACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTc                                                                                            >  2:1445570/1‑91 (MQ=255)

  cGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCg                                                                                          <  1:2858555/91‑1 (MQ=255)

  cGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCg                                                                                          <  2:6589427/91‑1 (MQ=255)

    aGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCCTCCTATATACAAATAGGACGGATATTCCGTg                                                                                        <  1:5581648/91‑1 (MQ=255)

     ggATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTgg                                                                                       <  2:1266128/91‑1 (MQ=255)

     ggATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTgg                                                                                       >  2:6822624/1‑91 (MQ=255)

     ggATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTgg                                                                                       >  2:1845007/1‑91 (MQ=255)

       aTCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTa                                                                                     >  1:29743/1‑91 (MQ=255)

       aTCATATTTTCGTTTCATTTCCATTTGATATAAAAAAAAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTa                                                                                     <  2:5544758/91‑1 (MQ=255)

          atatTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTTGTacca                                                                                  >  1:5812798/1‑91 (MQ=255)

            atTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTaccacc                                                                                <  1:791229/91‑1 (MQ=255)

               ttGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCtat                                                                             >  2:3399555/1‑91 (MQ=255)

               ttGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCtat                                                                             >  1:3524843/1‑91 (MQ=255)

                tGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCtata                                                                            <  2:5204694/91‑1 (MQ=255)

                  gTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATAtt                                                                          >  2:2552191/1‑91 (MQ=255)

                    ttCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCa                                                                        >  1:5263935/1‑91 (MQ=255)

                     ttaatcatccttcttgaatataggtggtaccacggaatatccatcctatatacaaataggacggatattCCGTGGTACCACCTATATTCaa                                                                       <  1:1227522‑M2/22‑1 (MQ=255)

                     tCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaa                                                                       <  1:3353402/91‑1 (MQ=255)

                      cATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaag                                                                      <  2:5779355/91‑1 (MQ=255)

                      cATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaag                                                                      <  1:3901018/91‑1 (MQ=255)

                       aatcatccttcttgaatataggtggtaccacggAATATCCGTCCTATTTGTATATAGGATGGATATTCCGTGGTACCACCTATATTCaaga                                                                     <  1:6999699‑M1/58‑1 (MQ=255)

                        tttCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCaagaa                                                                    >  1:1450467/1‑91 (MQ=255)

                          tCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAgg                                                                  <  1:1106733/91‑1 (MQ=255)

                           ccATTTGCTATACCTCCTAAAAAAATAAGAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGga                                                                 >  2:6691386/1‑91 (MQ=255)

                           ccATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGga                                                                 >  2:4158720/1‑91 (MQ=255)

                            cATTTGCTATACCTCCTAAAAAAATAAAACTATCCATCCTATATACAAATAAGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                                                                >  2:3164242/1‑91 (MQ=255)

                            cATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                                                                >  1:2471062/1‑91 (MQ=255)

                            cATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgat                                                                >  2:6234980/1‑91 (MQ=255)

                             aTTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgatg                                                               <  1:1666499/91‑1 (MQ=255)

                              tttGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgatga                                                              >  2:4428829/1‑91 (MQ=255)

                               ttGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgatgat                                                             <  2:4407084/91‑1 (MQ=255)

                               ttGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGgatgat                                                             <  2:3901112/91‑1 (MQ=255)

                                tGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGAtt                                                            >  2:6944194/1‑91 (MQ=255)

                                tGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGAtt                                                            <  1:6143624/91‑1 (MQ=255)

                                 gCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTa                                                           <  1:289504/91‑1 (MQ=255)

                                   tataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAat                                                         <  2:6099964/91‑1 (MQ=255)

                                    ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                                                        <  1:1294390/91‑1 (MQ=255)

                                    ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                                                        <  2:1718985/91‑1 (MQ=255)

                                    ataCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAata                                                        >  2:3804759/1‑91 (MQ=255)

                                     taCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAatat                                                       >  1:5991300/1‑91 (MQ=255)

                                      aCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATc                                                      <  1:1405524/91‑1 (MQ=255)

                                      aCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATc                                                      <  1:2391421/91‑1 (MQ=255)

                                      aCCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATc                                                      >  1:6102127/1‑91 (MQ=255)

                                       cctcctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCa                                                     <  1:4695351/91‑1 (MQ=255)

                                           ctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAAtt                                                 <  2:2232579/91‑1 (MQ=255)

                                           ctAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAAtt                                                 <  2:2311313/91‑1 (MQ=255)

                                             aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCa                                               <  2:3014178/91‑1 (MQ=255)

                                             aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCa                                               >  1:1041251/1‑91 (MQ=255)

                                             aaaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAAGATCAAATTCa                                               >  1:6968531/1‑91 (MQ=255)

                                              aaaaaaTAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCAc                                              <  1:5343629/91‑1 (MQ=255)

                                                 aaataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCActct                                           >  2:5122472/1‑91 (MQ=255)

                                                 aaataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCActct                                           >  1:4873000/1‑91 (MQ=255)

                                                  aataaaactaTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCtt                                          >  2:288823/1‑91 (MQ=255)

                                                  aataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCtt                                          >  1:3752129/1‑91 (MQ=255)

                                                  aataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAAGATCAAATTCACTCtt                                          >  2:5403351/1‑91 (MQ=255)

                                                   ataaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCttt                                         >  1:3105534/1‑91 (MQ=255)

                                                   acaaaaataTCCATCCCATATACACATCGGACGGATATTCCGTGGTACCACCTACATTCAAGAAGGATGCTTAATATCAAATCCACTCttt                                         >  2:1647360/3‑91 (MQ=255)

                                                    taaaaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCtttt                                        >  2:4987352/1‑91 (MQ=255)

                                                      ggaatatacgtcctatttgtatataggatggatattCCATGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTaa                                      >  1:6721394‑M2/37‑91 (MQ=255)

                                                      aaaataTCCATCCTATATACAAATAGGACGGATATTTTTATTTTCTTTTTTTTTTTTTGAAGGATGATTAATATAAAATTCACTCTTTTaa                                      >  2:543956/1‑91 (MQ=255)

                                                       aaataTCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAAc                                     <  1:4516401/91‑1 (MQ=255)

                                                          TATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATa                                  >  1:6058357‑M1/1‑91 (MQ=255)

                                                           ATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATaa                                 <  2:10720‑M1/91‑1 (MQ=255)

                                                           ATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATaa                                 <  1:4633993‑M1/91‑1 (MQ=255)

                                                           ATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATaa                                 >  2:6349487‑M1/1‑91 (MQ=255)

                                                            TCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAAt                                >  2:5998271‑M1/1‑91 (MQ=255)

                                                             ccgtcctatttgtatataggatggatattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAAtt                               >  2:2185182‑M2/30‑91 (MQ=255)

                                                             CCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCTAGAAGTATGATTAATATCAAATTCACTCTTTTAACATAAtt                               >  1:4947639‑M1/1‑91 (MQ=255)

                                                              CATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTg                              <  1:1613831‑M1/91‑1 (MQ=255)

                                                               atccTATATACAAATAGGTCGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTgg                             <  1:6882159/91‑1 (MQ=255)

                                                               atccTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTgg                             >  2:2691292/1‑91 (MQ=255)

                                                               atccTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTgg                             <  2:3253471/91‑1 (MQ=255)

                                                                 ccTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaa                           <  2:3390260/91‑1 (MQ=255)

                                                                 ccTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaa                           <  1:5663983/91‑1 (MQ=255)

                                                                  cTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaat                          <  2:3587310/91‑1 (MQ=255)

                                                                    atataCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaataa                        <  1:67754/91‑1 (MQ=255)

                                                                     tttgtatataggatggatattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaataat                       >  2:4856582‑M2/22‑91 (MQ=255)

                                                                     tataCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGaataat                       <  1:2129017/91‑1 (MQ=255)

                                                                      ttgtatataggatggatattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATc                      >  1:2193837‑M2/21‑91 (MQ=255)

                                                                      ataCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATc                      <  2:4786924/91‑1 (MQ=255)

                                                                       taCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCa                     <  2:1985053/91‑1 (MQ=255)

                                                                       taCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCa                     <  1:5547627/91‑1 (MQ=255)

                                                                       taCAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCa                     <  1:4138649/91‑1 (MQ=255)

                                                                         cAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATa                   <  1:6474773/91‑1 (MQ=255)

                                                                           aaTAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATAcc                 <  2:4628347/91‑1 (MQ=255)

                                                                               ggACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATa             >  1:1989990/1‑91 (MQ=255)

                                                                                 aCGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACt           <  2:2119236/91‑1 (MQ=255)

                                                                                  cGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTa          >  1:4765245/1‑91 (MQ=255)

                                                                                   ggatattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTat         >  1:1530423‑M2/8‑91 (MQ=255)

                                                                                   ggatattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTat         >  1:5129802‑M2/8‑91 (MQ=255)

                                                                                     atattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTatca       >  1:624697‑M2/6‑91 (MQ=255)

                                                                                      tattCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTatcat      <  1:1794984‑M2/87‑1 (MQ=255)

                                                                                       attCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTatcatc     >  1:4404660‑M2/4‑91 (MQ=255)

                                                                                        ttCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCg    <  2:5820103‑M2/89‑1 (MQ=255)

                                                                                        ttCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCg    >  2:4503320‑M2/3‑91 (MQ=255)

                                                                                         tCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGt   <  2:3654989‑M2/90‑1 (MQ=255)

                                                                                         tCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGt   >  1:1740138‑M2/2‑91 (MQ=255)

                                                                                          ccGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGTg  >  2:927753/1‑91 (MQ=255)

                                                                                          ccGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGTg  <  1:3034844/91‑1 (MQ=255)

CACGAGGATCATATTTTGGTTTCATTTCCATTTGCTATACCTCCTAAAAAAATAAAAATATCCATCCTATATACAAATAGGACGGATATTCCGTGGTACCACCTATATTCAAGAAGGATGATTAATATCAAATTCACTCTTTTAACATAATTGGAATAATCATACCAATACTATCATCGTG  >  USA300TCH1516_ALE/1765663‑1765843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.