New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1836934 =248 (0.690)15 (0.050) 8/132 NT 6.5% intergenic (+18/+132) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE 1836982 = 224 (0.760)intergenic (+66/+84) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 476 total aligned reads displayed.

TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGT  >  USA300TCH1516_ALE/1836844‑1837023
                                                                                          |                                                                                         
ttgtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaa                                                                                           <  1:1594348‑M1/1‑1 (MQ=255)
 tgtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaa                                                                                          <  2:3937816‑M1/2‑1 (MQ=255)
 ataATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAA                                                                                          >  1:1504911‑M1/1‑91 (MQ=255)
  gtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaa                                                                                         <  2:659999‑M1/3‑1 (MQ=255)
   taatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaaa                                                                                        <  2:1017448‑M1/4‑1 (MQ=255)
   taatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaaa                                                                                        <  2:4389550‑M1/4‑1 (MQ=255)
   aaTTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAA                                                                                        >  1:2690684‑M1/1‑91 (MQ=255)
    aatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAAt                                                                                       <  1:5470723‑M1/5‑1 (MQ=255)
    aTTGGTGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAAT                                                                                       <  1:6218319‑M1/91‑1 (MQ=255)
    aTTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAAT                                                                                       >  2:5822054‑M1/1‑91 (MQ=255)
      tgatgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGC                                                                                     >  2:2966098‑M1/1‑91 (MQ=255)
       ttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGcc                                                                                    <  1:1980316‑M1/8‑1 (MQ=255)
       gatgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCC                                                                                    >  1:6311023‑M1/1‑91 (MQ=255)
        tgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCa                                                                                   >  1:749586‑M1/83‑91 (MQ=255)
        atgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCA                                                                                   <  1:1771285‑M1/91‑1 (MQ=255)
        atgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCA                                                                                   <  2:3554790‑M1/91‑1 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                  >  1:5645314‑M1/1‑91 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                  <  1:6022880‑M1/91‑1 (MQ=255)
          gaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAG                                                                                 <  1:2641583‑M1/91‑1 (MQ=255)
           aaCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTGCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGA                                                                                <  2:1526238‑M1/91‑1 (MQ=255)
           aaCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGA                                                                                >  1:61240‑M1/1‑91 (MQ=255)
            tgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaa                                                                               >  1:6599693‑M1/79‑91 (MQ=255)
            tgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaa                                                                               <  1:4669870‑M1/13‑1 (MQ=255)
            aCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAA                                                                               >  1:4868445‑M1/1‑91 (MQ=255)
             gttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaag                                                                              >  1:3447370‑M1/78‑91 (MQ=255)
             cTTAAATAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTAGGTAAATTCAAAATGCCAAGAAG                                                                              <  2:5326301‑M1/91‑1 (MQ=255)
               tAAACAAGTTCGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGAc                                                                            <  2:5538161/91‑1 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                          >  1:2067025/1‑91 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                          >  1:245581/1‑91 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                          <  2:1750651/91‑1 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                          <  1:4760332/91‑1 (MQ=255)
                  aCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAtt                                                                         <  2:6127484/91‑1 (MQ=255)
                   cAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTg                                                                        >  2:6804264/1‑91 (MQ=255)
                     aGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGa                                                                      >  1:2139755/1‑91 (MQ=255)
                      gTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAt                                                                     >  1:3836534/1‑91 (MQ=255)
                      gTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAt                                                                     <  2:1423953/91‑1 (MQ=255)
                       ttGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAtt                                                                    >  1:108250/1‑91 (MQ=255)
                       ttGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAtt                                                                    >  1:2811836/1‑91 (MQ=255)
                        tGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTa                                                                   <  1:91755/91‑1 (MQ=255)
                         ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc                                                                  >  1:4507047/1‑91 (MQ=255)
                          gTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACt                                                                 >  1:6852574/1‑91 (MQ=255)
                             aaTACAATCAAATTGTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCTAAATGCCAAGAAAACATTGAATTACTTcc                                                              <  1:6408644/91‑1 (MQ=255)
                              aTACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                             >  2:2195041/1‑91 (MQ=255)
                               tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt                                                            >  1:2331532/1‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                           >  2:3768175‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                           >  2:6365280‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                           >  2:6899551‑M1/59‑91 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatg                                                           <  1:3602009‑M1/91‑20 (MQ=255)
                                   agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                        >  1:2389373‑M1/56‑91 (MQ=255)
                                     cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc                                                      <  2:5683902‑M2/91‑5 (MQ=255)
                                       aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                    <  1:4345093‑M2/91‑7 (MQ=255)
                                       aaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                    >  1:1244215‑M2/1‑85 (MQ=255)
                                         ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttgg                                                  <  2:2843512‑M2/91‑9 (MQ=255)
                                          tttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggc                                                 >  2:2753030‑M2/1‑82 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                >  1:314028‑M2/1‑81 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                <  2:4517696‑M2/91‑11 (MQ=255)
                                            tCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcat                                               >  2:3463266‑M2/1‑80 (MQ=255)
                                            tCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcat                                               <  2:2123885‑M2/91‑12 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                              <  1:863892‑M2/91‑13 (MQ=255)
                                              acaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattt                                             <  2:2013932‑M2/91‑14 (MQ=255)
                                               caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                            <  2:4586910‑M2/91‑15 (MQ=255)
                                                aaCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                           >  2:2807094/1‑91 (MQ=255)
                                                 aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                          <  2:2608006/91‑1 (MQ=255)
                                                 aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                          <  1:4168950/91‑1 (MQ=255)
                                                  cTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc                                         >  1:322252/1‑91 (MQ=255)
                                                   tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                        <  1:4590772/91‑1 (MQ=255)
                                                      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                     <  1:2907528/91‑1 (MQ=255)
                                                      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                     <  2:3223420/91‑1 (MQ=255)
                                                       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                    <  2:541252/91‑1 (MQ=255)
                                                       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                    <  1:517578/91‑1 (MQ=255)
                                                        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                   <  1:3324854/91‑1 (MQ=255)
                                                         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                  >  2:5161978/1‑91 (MQ=255)
                                                          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                 >  1:1456048/1‑91 (MQ=255)
                                                           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTttattattatt                                >  2:4084453/1‑89 (MQ=255)
                                                           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                >  2:591176/1‑91 (MQ=255)
                                                               aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                            >  1:3026750/1‑91 (MQ=255)
                                                               aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                            >  2:245098/1‑91 (MQ=255)
                                                               aCAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                            <  1:5276508/91‑1 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                         <  1:4076227/91‑1 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                         <  1:540485/91‑1 (MQ=255)
                                                                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                         <  2:2067025/91‑1 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                        >  1:5565039/1‑91 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                        >  2:4156570/1‑91 (MQ=255)
                                                                    cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                       <  2:214823/91‑1 (MQ=255)
                                                                       aaaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACt                    >  1:593290/1‑91 (MQ=255)
                                                                          cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                 >  2:4670948/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata               >  2:1236460/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata               >  1:4998996/1‑91 (MQ=255)
                                                                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat              <  2:129036/91‑1 (MQ=255)
                                                                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg             <  2:5023750/91‑1 (MQ=255)
                                                                                aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa           >  2:3083066/1‑91 (MQ=255)
                                                                                 tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa          <  2:6288414/91‑1 (MQ=255)
                                                                                 tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa          >  2:1631508/1‑91 (MQ=255)
                                                                                  gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc         <  2:2331532/91‑1 (MQ=255)
                                                                                  gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc         >  2:1839099/1‑91 (MQ=255)
                                                                                   tAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAcc        >  1:1691516/1‑91 (MQ=255)
                                                                                    aaaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCt       >  2:1475219/1‑91 (MQ=255)
                                                                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt      <  1:1352363/91‑1 (MQ=255)
                                                                                       ttCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTg    >  1:1031/1‑91 (MQ=255)
                                                                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt  <  2:6513785/91‑1 (MQ=255)
                                                                                          |                                                                                         
TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGT  >  USA300TCH1516_ALE/1836844‑1837023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.