BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1836934 =	248 (0.690)	15 (0.050)	8/132	NT	6.5%	intergenic (+18/+132)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	1836982 =	224 (0.760)	15 (0.050)	8/132	NT	6.5%	intergenic (+66/+84)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 394 total aligned reads displayed.

AACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836892‑1837072

aaCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                                                                            >  2:2807094/1‑91 (MQ=255)

 aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                                                                           <  1:4168950/91‑1 (MQ=255)

   tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                                         <  2:1375906/91‑1 (MQ=255)

   tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                                         <  2:2963064/91‑1 (MQ=255)

      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                      <  2:1828346/91‑1 (MQ=255)

      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                      <  1:3162695/91‑1 (MQ=255)

      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                      <  2:3223420/91‑1 (MQ=255)

       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                     >  2:6931117/1‑91 (MQ=255)

       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                     <  2:5750038/91‑1 (MQ=255)

       ttGACGGTACAGTCATAAACAATTCATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                     <  1:6605732/91‑1 (MQ=255)

        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                    <  2:2085683/91‑1 (MQ=255)

        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                    <  1:3324805/91‑1 (MQ=255)

         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                   >  2:3111254/1‑91 (MQ=255)

          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                  <  2:5513424/91‑1 (MQ=255)

            ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                                >  1:5023750/1‑91 (MQ=255)

             gTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAttt                                                                               <  2:2568754/91‑1 (MQ=255)

               aCAGTCATAAACAATTTATGTAAATTCAAAATGCTAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCa                                                                             <  2:2651421/91‑1 (MQ=255)

                 aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                                           >  1:4642069/1‑91 (MQ=255)

                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                          <  1:4076227/91‑1 (MQ=255)

                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                          <  2:2761700/91‑1 (MQ=255)

                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                          >  1:4751786/1‑91 (MQ=255)

                    cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTa                                                                        <  2:507603/91‑1 (MQ=255)

                      tAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAAc                                                                      <  1:518866/91‑1 (MQ=255)

                       aaaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACt                                                                     <  1:1190141/91‑1 (MQ=255)

                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                    <  1:1632658/91‑1 (MQ=255)

                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATGTTTTCATTATTAATTTCATTGTAACTc                                                                    <  2:5298263/91‑1 (MQ=255)

                          cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                                                                  <  1:3428682/91‑1 (MQ=255)

                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                >  1:2666773/1‑91 (MQ=255)

                            aTTTATGTAAATTCAAAATGACAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                >  1:6380048/1‑91 (MQ=255)

                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                               >  1:1713001/1‑91 (MQ=255)

                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                               <  1:6541519/91‑1 (MQ=255)

                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                               <  1:1333988/91‑1 (MQ=255)

                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAatat                                                               >  1:6092622/1‑91 (MQ=255)

                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                                              >  1:98033/1‑91 (MQ=255)

                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                                              <  1:909353/91‑1 (MQ=255)

                               tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa                                                             <  1:277662/91‑1 (MQ=255)

                                aTGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaa                                                            >  1:5713813/1‑91 (MQ=255)

                                 tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                           <  2:6288414/91‑1 (MQ=255)

                                 tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                           >  2:1631508/1‑91 (MQ=255)

                                 tGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTCTTCATTATTAATTTCATTGTAACTCAATATGaaa                                                           >  2:2193369/1‑91 (MQ=255)

                                  gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc                                                          >  2:1247619/1‑91 (MQ=255)

                                   tAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAcc                                                         >  2:4669870/1‑91 (MQ=255)

                                    aaaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCt                                                        >  2:1474919/1‑91 (MQ=255)

                                     aaTTCAAAATGCTAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                       <  2:4497840/91‑1 (MQ=255)

                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTATCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                       <  2:6789509/91‑1 (MQ=255)

                                       ttCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTg                                                     >  1:1031/1‑91 (MQ=255)

                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   <  1:5085855/91‑1 (MQ=255)

                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   <  1:1860867/91‑1 (MQ=255)

                                           AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                                 <  1:5251928‑M1/91‑1 (MQ=255)

                                           AAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTc                                                 <  2:712259‑M1/91‑1 (MQ=255)

                                            AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                                >  2:6235927‑M1/1‑91 (MQ=255)

                                            AATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                                >  1:6245167‑M1/1‑91 (MQ=255)

                                             ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                      >  2:639933‑M1/1‑52 (MQ=255)

                                              TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                                              <  1:5935711‑M1/91‑1 (MQ=255)

                                              TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                                              <  2:1087213‑M1/91‑1 (MQ=255)

                                               GCCAAGAAGACATTGGATTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                             >  2:5887383‑M1/1‑91 (MQ=255)

                                                CCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCa                                            >  1:2871108‑M1/1‑91 (MQ=255)

                                                 CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                                           >  2:3362004‑M1/1‑91 (MQ=255)

                                                 CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                                           >  2:2833462‑M1/1‑91 (MQ=255)

                                                  AAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAtt                                          <  2:4728765‑M1/91‑1 (MQ=255)

                                                      agcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                      >  1:2389373‑M2/37‑91 (MQ=255)

                                                      AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                      <  1:2251209‑M1/91‑1 (MQ=255)

                                                      AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                      >  1:2541449‑M1/1‑91 (MQ=255)

                                                       GACATTGGATTACTTCCATTGCTTCTTGGCATTTCTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                     <  2:4159303‑M1/91‑1 (MQ=255)

                                                        aCATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                    >  1:3679381/1‑91 (MQ=255)

                                                         cATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                   <  1:2174611/91‑1 (MQ=255)

                                                         aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAGTCATTCACTACa                                   >  2:4533666‑M2/34‑91 (MQ=255)

                                                         aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                   >  1:2944638‑M2/34‑91 (MQ=255)

                                                         aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                   >  2:3768175‑M2/34‑91 (MQ=255)

                                                          aTTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACaa                                  <  2:6524339/91‑1 (MQ=255)

                                                           ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTATTTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAg                                 >  2:558571/1‑91 (MQ=255)

                                                            tGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTAAATCATTCACTACAAGt                                <  2:3625082/91‑1 (MQ=255)

                                                              gATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTa                              >  1:5426871/1‑91 (MQ=255)

                                                               aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                             <  1:1246250/91‑1 (MQ=255)

                                                               aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                             <  1:140806/91‑1 (MQ=255)

                                                                ttACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATg                            <  2:1878605/91‑1 (MQ=255)

                                                                  aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt                          <  1:5291947/91‑1 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         <  2:6046182/91‑1 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  1:6209191/1‑91 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  1:452694/1‑91 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  1:2444845/1‑91 (MQ=255)

                                                                       cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                     >  1:465804/1‑91 (MQ=255)

                                                                       cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                     >  1:4980047/1‑91 (MQ=255)

                                                                       cATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaa                     >  2:2339245/1‑91 (MQ=255)

                                                                        aTTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCaaa                    <  1:3877737/91‑1 (MQ=255)

                                                                         ttGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaac                   <  2:2438133/91‑1 (MQ=255)

                                                                          tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca                  <  1:3365041/91‑1 (MQ=255)

                                                                            cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaac                >  2:5418115‑M2/15‑91 (MQ=255)

                                                                            cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaac                >  2:202794‑M2/15‑91 (MQ=255)

                                                                               cttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAacaacaaa             <  2:4096399‑M2/80‑2 (MQ=255)

                                                                                 tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCa           >  1:749586‑M2/10‑91 (MQ=255)

                                                                                  ggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaa          >  1:5479545‑M2/9‑91 (MQ=255)

                                                                                  ggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaa          >  1:3547535‑M2/9‑91 (MQ=255)

                                                                                     attttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCACACAACAATCAAAtt       >  2:4922745‑M2/6‑91 (MQ=255)

                                                                                      ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTa      >  1:149343‑M2/5‑91 (MQ=255)

                                                                                      ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTa      <  2:4389550‑M2/87‑1 (MQ=255)

                                                                                       tttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTAc     <  2:659999‑M2/88‑1 (MQ=255)

                                                                                        ttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACa    <  2:3937816‑M2/89‑1 (MQ=255)

                                                                                        ttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACa    <  1:6889072‑M2/89‑1 (MQ=255)

                                                                                         tTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACaa   >  1:4343262‑M2/2‑91 (MQ=255)

AACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836892‑1837072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.