| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2143383 | 214 (0.600) | 11 (0.040) | 8/132 | NT | 5.8% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 183 (0.620) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
Only 100 of 456 total aligned reads displayed.
ATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143293‑2143473 | tagcaattgtatgttctatgatggtggtattttcaatcatgctattcttctttgtaaagcgaaataaaaagaagaatAAAAACGAATcaca < 2:3031416‑M1/14‑1 (MQ=255) ttACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacac < 1:5241199/91‑1 (MQ=255) ttACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacac > 1:4762390/1‑91 (MQ=255) tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacaca < 1:643613/91‑1 (MQ=255) tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacaca < 1:2959665/91‑1 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAACAAAACGAATCACACACg > 2:3176162/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 2:5580667/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 2:3758071/1‑91 (MQ=255) ttAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATCAACACAACGAATCACACACgg > 1:3031416/1‑91 (MQ=255) ttAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACgg < 2:5924316/91‑1 (MQ=255) tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGa < 2:1290609/91‑1 (MQ=255) tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTACTCCATAATAAAAAAAACGAATCACACACGGa > 1:6495611/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 2:1110911/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 1:1766154/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 1:4046061/1‑91 (MQ=255) tCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTa < 1:3166267/91‑1 (MQ=255) tCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTa < 2:4211982/91‑1 (MQ=255) tGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcg < 2:2950551/91‑1 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 2:265116/1‑91 (MQ=255) gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc > 2:4055817/1‑91 (MQ=255) cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgt < 1:6071726‑M1/91‑18 (MQ=255) tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg < 2:5200954‑M2/91‑3 (MQ=255) tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg < 2:5703486‑M2/91‑3 (MQ=255) ttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgt < 2:6557353‑M2/91‑4 (MQ=255) ttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgt < 2:6787345‑M2/91‑4 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg > 1:396697‑M2/1‑87 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg < 2:3517276‑M2/91‑5 (MQ=255) aaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAATAAAAACGAATCACAgcgacgataatccgtgtgtgattc < 1:2847534‑M1/91‑25 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 2:3916234‑M2/91‑10 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 2:2781776‑M2/91‑10 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTACATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg > 2:1210980‑M2/1‑82 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt < 1:1423115‑M2/91‑11 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 2:1419966‑M2/91‑13 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAATAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt > 1:5454331‑M2/1‑78 (MQ=255) aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa > 1:4216925/1‑91 (MQ=255) aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa > 2:6314497/1‑91 (MQ=255) gAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttt > 2:3593363/1‑91 (MQ=255) aaCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt < 2:3693710/91‑1 (MQ=255) aaCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt < 2:5776055/91‑1 (MQ=255) cAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc < 2:1571904/91‑1 (MQ=255) aaGCGAATTTTATATATCACATTTTTTTTTTTTTTTAAAAAAAAAGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCt > 2:453678/1‑91 (MQ=255) aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt < 1:779515/91‑1 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGCTTCGTTTTTATTTTTCTTTTTa < 2:5318729/91‑1 (MQ=255) aTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGACTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt < 1:5340428/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 2:2576094/91‑1 (MQ=255) atatatCACATTTTTATTCCATAATAAAAAAACCGAATCACACACGGATTATCGCCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc > 2:6066797/1‑91 (MQ=255) atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc > 2:4723169/1‑91 (MQ=255) tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt < 1:25943/91‑1 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt < 2:2449097/91‑1 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt < 2:4857295/91‑1 (MQ=255) tatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt < 1:871736/91‑1 (MQ=255) atCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTa < 1:5931700/91‑1 (MQ=255) aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt < 2:907857/91‑1 (MQ=255) aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt < 1:6290574/91‑1 (MQ=255) aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt < 1:6177728/91‑1 (MQ=255) ttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa < 1:4686703/91‑1 (MQ=255) tATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa > 1:5564932/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTTTTTCGCTTTACAAATAAGAAt > 2:232765/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt > 2:5416911/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt < 1:6686365/91‑1 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt > 1:3811925/1‑91 (MQ=255) tCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAACTAAGAATAg > 2:6631064/1‑91 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGGTTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc < 1:4330180/91‑1 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACTAATAAGAATTGc > 2:2270313/1‑91 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc < 1:1022344/91‑1 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc > 1:2073613/1‑91 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc < 1:3659085/91‑1 (MQ=255) aaaaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtg > 1:3906905‑M1/1‑14 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 2:4390424‑M1/91‑1 (MQ=255) aaaaCGAATCACGgcgacgataatccgtgtgtgattcgttttttttattatggaagaaaaatgtgatatataaaattcgcttgttccgtgg < 1:6910307‑M1/91‑79 (MQ=255) aaaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtgg < 2:641722‑M1/91‑79 (MQ=255) aaaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggc < 1:1927942‑M1/91‑80 (MQ=255) aaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggct < 2:3460912‑M1/91‑81 (MQ=255) aaCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggct < 2:490095‑M1/91‑81 (MQ=255) aCGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctt < 2:4649041‑M1/91‑82 (MQ=255) ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACATATAAGAATAGAATGATTGAAAATac < 2:3243647‑M1/91‑1 (MQ=255) ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac < 1:1554644‑M1/91‑1 (MQ=255) cGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttt < 2:4085989‑M1/91‑83 (MQ=255) GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca < 1:6929413‑M1/91‑1 (MQ=255) GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca < 1:2167378‑M1/91‑1 (MQ=255) AATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccac > 1:1098318‑M1/1‑91 (MQ=255) aTCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaacatgtgatatataaaattcgcttgttccgtggctttttt > 1:5794522‑M1/1‑6 (MQ=255) aTCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt < 1:5901072‑M1/91‑86 (MQ=255) aTCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt > 1:2705440‑M1/1‑6 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc > 1:6821003‑M1/1‑91 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc < 2:1972408‑M1/91‑1 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc < 1:5686441‑M1/91‑1 (MQ=255) tCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttc < 2:1751259‑M1/91‑87 (MQ=255) tCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttc < 1:652512‑M2/91‑71 (MQ=255) TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAaataccaaca < 2:6183204‑M1/91‑4 (MQ=255) TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca < 1:4461622‑M1/91‑1 (MQ=255) cacacaCGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttca < 1:4540965‑M2/91‑72 (MQ=255) acagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa > 1:3495405‑M1/1‑3 (MQ=255) acagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa > 2:4488998‑M1/1‑3 (MQ=255) ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc < 2:6988226‑M1/91‑1 (MQ=255) cagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaa < 1:234095‑M1/91‑90 (MQ=255) cagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaa < 2:5200470‑M1/91‑90 (MQ=255) cagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaa < 1:4967292‑M1/91‑90 (MQ=255) CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca > 2:1802553‑M1/1‑91 (MQ=255) agcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaag < 1:3286565‑M1/91‑91 (MQ=255) | ATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143293‑2143473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |