New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2143383214 (0.600)11 (0.040) 8/132 NT 5.8% intergenic (+18/+7) USA300HOU_RS10935/USA300HOU_RS10940 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 2143399 183 (0.620)coding (1245/1254 nt) USA300HOU_RS10940 hypothetical protein

Only 100 of 369 total aligned reads displayed.

GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCT  >  USA300TCH1516_ALE/2143309‑2143489
                                                                                          |                                                                                          
gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc                                                                                            >  2:4055817/1‑91 (MQ=255)
 cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCGCACACGGATTATCGTCGCt                                                                                           <  1:4319379‑M2/91‑2 (MQ=255)
  tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg                                                                                          <  1:4967292‑M2/91‑3 (MQ=255)
  tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg                                                                                          <  2:5703486‑M2/91‑3 (MQ=255)
  tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg                                                                                          <  1:3042889‑M2/91‑3 (MQ=255)
  tgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtg                                                                                          >  1:3790342‑M1/60‑91 (MQ=255)
   ttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgt                                                                                         <  2:6787345‑M2/91‑4 (MQ=255)
   ttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgt                                                                                         <  2:6557353‑M2/91‑4 (MQ=255)
   ttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgt                                                                                         >  1:3495405‑M2/1‑88 (MQ=255)
    tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATAATCGTCGCtgtg                                                                                        <  2:4496799‑M2/91‑5 (MQ=255)
     gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga                                                                                       <  2:1751259‑M2/91‑6 (MQ=255)
     gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga                                                                                       <  1:5684195‑M2/91‑6 (MQ=255)
       gtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt                                                                                     >  2:1839585‑M1/55‑91 (MQ=255)
       aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgatt                                                                                     <  2:4889988‑M2/91‑8 (MQ=255)
         aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg                                                                                   <  2:3916234‑M2/91‑10 (MQ=255)
           aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt                                                                                 <  2:3460912‑M2/91‑12 (MQ=255)
             ccACGGAACAAGCGAATTTTATATATCACATTTTTCTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCcgtgattcgtttt                                                                               <  1:6910307‑M2/91‑14 (MQ=255)
              cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttttt                                                                              >  1:3906905‑M2/1‑77 (MQ=255)
              cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttttt                                                                              <  2:3734852‑M2/91‑15 (MQ=255)
               aCGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTa                                                                             >  1:6651623/1‑91 (MQ=255)
                cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                            >  1:574620/1‑91 (MQ=255)
                cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                            <  2:5929755/91‑1 (MQ=255)
                  gAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttt                                                                          <  2:3644621/91‑1 (MQ=255)
                  gAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttt                                                                          >  2:4118274/1‑91 (MQ=255)
                       aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt                                                                     <  1:779515/91‑1 (MQ=255)
                       aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt                                                                     >  1:6321431/1‑91 (MQ=255)
                           aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa                                                                 <  1:1572964/91‑1 (MQ=255)
                            aTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGACTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAt                                                                <  1:5340428/91‑1 (MQ=255)
                             ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                                               <  2:2576094/91‑1 (MQ=255)
                              cttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGAtt                                                                                     >  1:1415855‑M1/32‑68 (MQ=255)
                               ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                                             <  1:6099337/91‑1 (MQ=255)
                               ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                                             >  2:149959/1‑91 (MQ=255)
                                 atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACTGATTATCGTTGCTGTGATTCGTTTTTATTTTTTTTTTTTTTTctt                                                           >  2:6067984/1‑89 (MQ=255)
                                 atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                           >  2:4723169/1‑91 (MQ=255)
                                  tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                                                          >  1:6518803/1‑91 (MQ=255)
                                  tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                                                          <  2:241513/91‑1 (MQ=255)
                                  tatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCt                                                          <  1:25943/91‑1 (MQ=255)
                                   ttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                         >  1:3185278‑M1/27‑91 (MQ=255)
                                    tatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt                                                        >  1:5911682/1‑91 (MQ=255)
                                     atCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTa                                                       <  2:5424123/91‑1 (MQ=255)
                                      tCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAc                                                      <  1:5471503/91‑1 (MQ=255)
                                      tCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAc                                                      >  1:403655/1‑91 (MQ=255)
                                       cacaTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACa                                                     >  1:1088643/1‑91 (MQ=255)
                                         caTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa                                                   >  1:2525491/1‑91 (MQ=255)
                                          aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt                                                  <  1:5936630/91‑1 (MQ=255)
                                              ttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa                                              <  1:4686703/91‑1 (MQ=255)
                                               tATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                                             >  1:6778845/1‑91 (MQ=255)
                                                aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt                                            >  1:3811925/1‑91 (MQ=255)
                                                aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt                                            <  2:2630814/91‑1 (MQ=255)
                                                aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt                                            >  2:1699519/1‑91 (MQ=255)
                                                 ttCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa                                           >  1:5597737/1‑91 (MQ=255)
                                                  tCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg                                          <  1:2306249/91‑1 (MQ=255)
                                                  tCCAGAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg                                          <  2:254411/91‑1 (MQ=255)
                                                   ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                         <  2:5788796/91‑1 (MQ=255)
                                                   ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                         <  1:1022344/91‑1 (MQ=255)
                                                   ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                         >  1:2073613/1‑91 (MQ=255)
                                                     ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                       <  2:6294524/91‑1 (MQ=255)
                                                      aaataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATg                                      <  2:3341508/90‑1 (MQ=255)
                                                       aataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGa                                     >  1:93318/1‑91 (MQ=255)
                                                            tcatAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaa                                >  2:6721130‑M1/5‑91 (MQ=255)
                                                             AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                               <  2:4390424‑M1/91‑1 (MQ=255)
                                                             AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                               <  1:5189015‑M1/91‑1 (MQ=255)
                                                              AAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                              <  2:324027‑M1/91‑1 (MQ=255)
                                                              AAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaaa                              <  1:155373‑M1/91‑1 (MQ=255)
                                                               AAACGACTCACACACCGATTATCGTCGCTGTGATTCGTATTTATTGTTCTTTTTATATCCCTTCACAAATAAGAATAGCATGATTGAAAAt                             >  2:1286100‑M1/1‑91 (MQ=255)
                                                                AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa                            <  2:2319202‑M1/91‑1 (MQ=255)
                                                                 ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac                           >  2:5246306‑M1/1‑91 (MQ=255)
                                                                  CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTTTTTTTTTTTACTAATAAGAATAGCATGATTGAAAATacc                          <  2:2835576‑M1/91‑1 (MQ=255)
                                                                  CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                          <  2:4604026‑M1/91‑1 (MQ=255)
                                                                  CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                          >  1:6440087‑M1/1‑91 (MQ=255)
                                                                   gAATCACACACGGATTATCGTCGCtgtgattcgtttttattattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttt                         <  1:2847534‑M2/91‑68 (MQ=255)
                                                                   GAATCACACACTGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca                         <  2:6942355‑M1/91‑1 (MQ=255)
                                                                   GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca                         <  1:2167378‑M1/91‑1 (MQ=255)
                                                                     ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAaataccccc                       <  2:920451‑M1/91‑4 (MQ=255)
                                                                     ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                       <  2:1972408‑M1/91‑1 (MQ=255)
                                                                      TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAtaccaccc                      <  2:1207386‑M1/91‑2 (MQ=255)
                                                                      TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca                      <  2:5361467‑M1/91‑1 (MQ=255)
                                                                      TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca                      >  2:6376226‑M1/1‑91 (MQ=255)
                                                                      TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca                      <  1:4461622‑M1/91‑1 (MQ=255)
                                                                      TCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATAccacca                      >  1:58114‑M1/1‑91 (MQ=255)
                                                                       CACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcat                     <  1:6195768‑M1/91‑1 (MQ=255)
                                                                         CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca                   <  1:3988548‑M1/91‑1 (MQ=255)
                                                                         CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca                   >  1:3278324‑M1/1‑91 (MQ=255)
                                                                            acGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAg                >  2:2197165/1‑91 (MQ=255)
                                                                            acGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAg                <  2:3083452/91‑1 (MQ=255)
                                                                             cGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGa               >  2:6179572/1‑91 (MQ=255)
                                                                               gATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAAc             <  1:1910063/91‑1 (MQ=255)
                                                                                 ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt           >  2:507751/1‑91 (MQ=255)
                                                                                 ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt           <  1:4492513/91‑1 (MQ=255)
                                                                                 ttATCGTCGCTGTGATTCGTTTTTATTTTTCCTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt           >  1:6821753/1‑91 (MQ=255)
                                                                                  tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa          <  2:4216925/91‑1 (MQ=255)
                                                                                  tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa          <  2:823482/91‑1 (MQ=255)
                                                                                  tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa          <  2:3534311/91‑1 (MQ=255)
                                                                                   aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc         >  1:3615971/1‑91 (MQ=255)
                                                                                   aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc         >  2:4927881/1‑91 (MQ=255)
                                                                                    tcgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACa        >  1:2981362/1‑91 (MQ=255)
                                                                                    tcgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACa        <  1:4170013/91‑1 (MQ=255)
                                                                                     cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACaa       >  1:6583127/1‑91 (MQ=255)
                                                                                     cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACaa       >  2:5216652/1‑91 (MQ=255)
                                                                                       tcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAAtt     <  1:700040/91‑1 (MQ=255)
                                                                                          |                                                                                          
GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCT  >  USA300TCH1516_ALE/2143309‑2143489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.