| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2740979 | 316 (0.880) | 18 (0.060) | 12/132 | NT | 5.8% | intergenic (+21/+60) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | = 2741001 | 321 (1.090) | intergenic (+43/+38) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
Only 100 of 566 total aligned reads displayed.
CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGA > USA300TCH1516_ALE/2740889‑2741069 | cTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTccc < 1:4389578/91‑1 (MQ=255) tataTTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCa > 2:1850410/1‑91 (MQ=255) tataTTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCa < 2:5670696/91‑1 (MQ=255) atatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCAt < 1:395998/91‑1 (MQ=255) tatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATc > 1:5830449/1‑91 (MQ=255) tatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATc < 1:3586876/91‑1 (MQ=255) tatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATc > 2:1408689/1‑91 (MQ=255) atTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCt > 2:303477/1‑91 (MQ=255) tttAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGATGAATACAACAAACAAAAATAAAAAATAAAAAAAATCATTTCCCATCTg < 2:2878144/91‑1 (MQ=255) ttAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGa > 1:234530/1‑91 (MQ=255) ttAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAAAAAAAAAATCATTTCCCATCTGa < 2:5465066/91‑1 (MQ=255) tAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGAt > 1:5040155/1‑91 (MQ=255) aGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTa > 1:6202611/1‑91 (MQ=255) aGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTa > 2:5317306/1‑91 (MQ=255) gTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCGACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTaa > 1:6798881/1‑91 (MQ=255) gTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTaa > 2:1781235/1‑91 (MQ=255) ttATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAAc < 1:4078263/91‑1 (MQ=255) ttATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAAc > 2:6497923/1‑91 (MQ=255) tATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACa < 1:2989992/91‑1 (MQ=255) tATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACa < 1:4839295/91‑1 (MQ=255) aTGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACAt > 1:418643/1‑91 (MQ=255) tGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATc < 1:771397/91‑1 (MQ=255) tGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATc > 2:4995479/1‑91 (MQ=255) tGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCAAAAAAAAAAAAAAAAAAAAAAAAAAATCATTTCCCATCTGATTAACATc < 2:2136769/91‑1 (MQ=255) ggACTTAGACATTCTAAGAAAAATGACGTATCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATcc > 2:3130970/1‑91 (MQ=255) ggACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATcc > 2:3265815/1‑91 (MQ=255) gACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCa < 1:3793487/91‑1 (MQ=255) aCTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAg > 2:1327521/1‑91 (MQ=255) tAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGAtg > 2:5073761/1‑91 (MQ=255) tAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGAtg > 1:1414584/1‑91 (MQ=255) aGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCacatctggatgttaatcagatg < 1:1147845‑M1/91‑23 (MQ=255) aGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGAtgt > 1:5136781/1‑91 (MQ=255) aGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGAtgt < 1:6240904/91‑1 (MQ=255) aCATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTgg > 1:1327664‑M2/1‑89 (MQ=255) cATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTgga > 1:5222909‑M2/1‑88 (MQ=255) tCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaat > 1:5896912‑M2/1‑85 (MQ=255) cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatg < 1:3411550‑M2/91‑8 (MQ=255) cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatg < 1:6487659‑M2/91‑8 (MQ=255) tAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatga < 2:3887116‑M2/91‑9 (MQ=255) aGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgatt < 1:2088777‑M2/91‑11 (MQ=255) aaaaaTGACGTAGATGAATACCAACCACAAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgatttt > 2:4127960‑M2/1‑79 (MQ=255) aaaTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgatttttt < 1:3882459‑M2/91‑15 (MQ=255) aaTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACa > 1:917531/1‑67 (MQ=255) aaTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACa < 2:917531/67‑1 (MQ=255) aTGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat < 2:2705277/91‑1 (MQ=255) ggACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatt < 2:1631109/90‑1 (MQ=255) gTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTtttattttat > 1:2652575/1‑91 (MQ=255) agatGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCTCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat < 2:6156942/88‑1 (MQ=255) aGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat > 2:4431856/1‑91 (MQ=255) aGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat > 2:3716078/1‑91 (MQ=255) aGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTatat > 1:4323196/1‑91 (MQ=255) atGAATAACACCCAACAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa < 2:723962/90‑1 (MQ=255) gAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAg < 2:784455/91‑1 (MQ=255) aTACCACCCATCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCATATGTGGAAATGATTTTTTATTTTATATTAAGAt < 1:6950681/91‑1 (MQ=255) tACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATa < 1:2133530/91‑1 (MQ=255) accaccCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATaa < 2:6796817/91‑1 (MQ=255) ccacccacCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATTTTAAGATAAt > 2:2214086/1‑91 (MQ=255) ccaccaAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCt < 1:2721859/91‑1 (MQ=255) aaataaaaaataaaAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc > 1:988966/1‑91 (MQ=255) aaataaaaaataaaAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc > 1:2198745/1‑91 (MQ=255) aataaaaaataaaaAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCa < 1:391518/91‑1 (MQ=255) aaaaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAAc < 2:4931747/90‑1 (MQ=255) aaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattttttattttatattttggtgggtggtattcagctacg < 2:2441299‑M2/91‑48 (MQ=255) aaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattttttattttatattttggtgggtggtattcagctacg < 1:3714652‑M2/91‑48 (MQ=255) aaaaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTggaaatgattttttattttatattttggtgggtggtattcagctacg < 2:5401873‑M2/91‑48 (MQ=255) aaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTg < 2:4571251/91‑1 (MQ=255) aaataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTg > 2:111144/1‑91 (MQ=255) aataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGt > 1:1823126/1‑91 (MQ=255) aataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGt > 1:5718631/1‑91 (MQ=255) ataaaaaaAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTc > 1:3082664/1‑91 (MQ=255) aaaaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAg < 2:1205481/91‑1 (MQ=255) aaaaaaTCATTTCCacatctggacgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcattt < 1:4883226‑M1/91‑78 (MQ=255) aaaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttt < 2:1990608‑M1/91‑79 (MQ=255) aaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGat < 2:4050875/91‑1 (MQ=255) aaaaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGat > 2:4827155/1‑91 (MQ=255) aaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcattttt > 2:552595‑M1/1‑12 (MQ=255) aaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcattttt < 1:5351510‑M1/91‑80 (MQ=255) aaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcattttt > 1:564876‑M1/1‑12 (MQ=255) aaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggt > 2:3542833‑M1/1‑12 (MQ=255) aaaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggt < 1:3542833‑M1/72‑61 (MQ=255) aaaTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttc < 1:1668649‑M1/91‑81 (MQ=255) aaaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGatat > 2:5998090/1‑91 (MQ=255) aaTCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATg > 1:2793666/1‑91 (MQ=255) aTCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttctt > 2:2573368‑M1/1‑9 (MQ=255) tCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttctta > 1:2522946‑M1/1‑8 (MQ=255) tCATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttctta > 1:3332144‑M1/1‑8 (MQ=255) tCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTc < 1:5496934/91‑1 (MQ=255) cATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttag < 2:4204548‑M1/91‑85 (MQ=255) cATTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttag < 2:2781626‑M1/91‑85 (MQ=255) aTTTCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttaga > 1:1989910‑M1/1‑6 (MQ=255) aTTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCat > 1:467212/1‑91 (MQ=255) tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata < 1:3229267/91‑1 (MQ=255) tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata > 2:6315442/1‑91 (MQ=255) tttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCata > 2:6930214/1‑91 (MQ=255) ttCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCatat > 1:6334437/1‑91 (MQ=255) tCCacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttagaatg > 1:656057‑M1/1‑3 (MQ=255) cccATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTg > 1:1029226/1‑91 (MQ=255) ccATCTGATTAACATCCAGATGTggcaatgattttttttattttttattttggttggtggtattcagctacgtcgtttttcttagaatgtc < 2:6652623‑M2/91‑69 (MQ=255) cacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttagaatgtc > 1:196682‑M1/1‑1 (MQ=255) cacatctggatgttaatcagatgggaaatgattttttttattttttattttggtgggtggtattcagctacgtcatttttcttagaatgtc > 2:3386078‑M1/1‑1 (MQ=255) | CCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAATAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGATATGTCATATTGA > USA300TCH1516_ALE/2740889‑2741069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |